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The map label for this gene is slyD [C]

Identifier: 189423501

GI number: 189423501

Start: 406730

End: 407158

Strand: Reverse

Name: slyD [C]

Synonym: Glov_0430

Alternate gene names: 189423501

Gene position: 407158-406730 (Counterclockwise)

Preceding gene: 189423502

Following gene: 189423500

Centisome position: 10.39

GC content: 57.58

Gene sequence:

>429_bases
ATGAAACAGGCCCGACACGGCAGTACGGTGACGGTCAGTTATATCGGCACCCTGGATACCGGCCGGATCTTCGACAGCAC
CGAAACCAGCGGCCCGTTAACCTTTACCATCGGCAATGACCAGGTCTTTTCTGCGCTGGAACAGGCCATCATCGGCATGG
CTGCGGGCGAGACCAAGAATATCCTGATCCCTGCGGCAGAGGCCTACGGGCCGCGCCTTGATGCCAATATCATCAAGGTG
AAGCGGGAGATGTTTCCGGCTGAACGGGAGCTGCGGATCGGTGAAAAGCTGCGGATTGAATTCAGCGGCGGCAGAGAGCG
GATATTGGTGATTCTGGAGGCGGATCAGAAGGAAGTAACGCTGGATGGTAATCACCCCCTGGCGGGATGTGATCTGACCT
TTGCCCTGCGGCTGGATGCACTGCAATGA

Upstream 100 bases:

>100_bases
ACGGACGGGACCCCCAAAACCCCGCCTGCAGCAGGTGCGGCCGGCGGATCTGCAGTTGCGGAGCCTGCGGCTGCCCAAAA
CCAGACAAGGAGACACCTCT

Downstream 100 bases:

>100_bases
GTAAACCTGACCGCTATGTTTCATTTGTGGGGATTGATGGCGACTCAAATGCACGAAAGCTGGTGGCGCTGCTCCGCCGC
CATATTGATGACCCTGCCAG

Product: FKBP-type peptidylprolyl isomerase

Products: NA

Alternate protein names: PPIase; MtFK; Rotamase [H]

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKQARHGSTVTVSYIGTLDTGRIFDSTETSGPLTFTIGNDQVFSALEQAIIGMAAGETKNILIPAAEAYGPRLDANIIKV
KREMFPAERELRIGEKLRIEFSGGRERILVILEADQKEVTLDGNHPLAGCDLTFALRLDALQ

Sequences:

>Translated_142_residues
MKQARHGSTVTVSYIGTLDTGRIFDSTETSGPLTFTIGNDQVFSALEQAIIGMAAGETKNILIPAAEAYGPRLDANIIKV
KREMFPAERELRIGEKLRIEFSGGRERILVILEADQKEVTLDGNHPLAGCDLTFALRLDALQ
>Mature_142_residues
MKQARHGSTVTVSYIGTLDTGRIFDSTETSGPLTFTIGNDQVFSALEQAIIGMAAGETKNILIPAAEAYGPRLDANIIKV
KREMFPAERELRIGEKLRIEFSGGRERILVILEADQKEVTLDGNHPLAGCDLTFALRLDALQ

Specific function: PPIases accelerate the folding of proteins [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=135, Percent_Identity=28.8888888888889, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 15517; Mature: 15517

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQARHGSTVTVSYIGTLDTGRIFDSTETSGPLTFTIGNDQVFSALEQAIIGMAAGETKN
CCCCCCCCEEEEEEEEECCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHHEECCCCCCE
ILIPAAEAYGPRLDANIIKVKREMFPAERELRIGEKLRIEFSGGRERILVILEADQKEVT
EEEECHHHCCCCCCCHHEEEEHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEE
LDGNHPLAGCDLTFALRLDALQ
ECCCCCEECCCEEEEEEEECCC
>Mature Secondary Structure
MKQARHGSTVTVSYIGTLDTGRIFDSTETSGPLTFTIGNDQVFSALEQAIIGMAAGETKN
CCCCCCCCEEEEEEEEECCCCCEECCCCCCCCEEEEECCHHHHHHHHHHHHEECCCCCCE
ILIPAAEAYGPRLDANIIKVKREMFPAERELRIGEKLRIEFSGGRERILVILEADQKEVT
EEEECHHHCCCCCCCHHEEEEHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEE
LDGNHPLAGCDLTFALRLDALQ
ECCCCCEECCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9440528 [H]