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The map label for this gene is ybdD [H]

Identifier: 189354026

GI number: 189354026

Start: 2354245

End: 2354451

Strand: Reverse

Name: ybdD [H]

Synonym: BMULJ_05279

Alternate gene names: 189354026

Gene position: 2354451-2354245 (Counterclockwise)

Preceding gene: 189354027

Following gene: 189354025

Centisome position: 95.2

GC content: 66.18

Gene sequence:

>207_bases
ATGTTCAGCGATCTCGGCAGCGACCTGCGCAGCGCCGGACGTTATCTCGGGCAGGCGCTGCGGCTGATGGTCGGGTTGCC
CGACTACGACACCTATGTCGCCCACATGCGCACGACGCATCCGGACCGCGAGCCGATGACGTACGAGGAATTCTTCCGCG
AGCGCCAGAACGCGCGGTACGGATCGGGCGCGGGGAAGTGCTGCTGA

Upstream 100 bases:

>100_bases
CGCGCACGCCGCGAGGCGAAGCCGACCGTGCGCGAGACGCCGTACGAAGCGATGCCGGCCGCGCAGGCGCTCGGCAGCGG
ACGCTGAAGCGGAGGCCGCG

Downstream 100 bases:

>100_bases
ACTGAACCGGCCGGACTCCGGTGATGTCAGTCGAAGGCGCCGTGACGCAAGTCACGGCGCTTTTTCATTGCGCGCGCGGC
GCATCGCCGTTGTGCGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MFSDLGSDLRSAGRYLGQALRLMVGLPDYDTYVAHMRTTHPDREPMTYEEFFRERQNARYGSGAGKCC

Sequences:

>Translated_68_residues
MFSDLGSDLRSAGRYLGQALRLMVGLPDYDTYVAHMRTTHPDREPMTYEEFFRERQNARYGSGAGKCC
>Mature_68_residues
MFSDLGSDLRSAGRYLGQALRLMVGLPDYDTYVAHMRTTHPDREPMTYEEFFRERQNARYGSGAGKCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=61, Percent_Identity=68.8524590163934, Blast_Score=96, Evalue=4e-22,
Organism=Escherichia coli, GI1790813, Length=71, Percent_Identity=57.7464788732394, Blast_Score=89, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7797; Mature: 7797

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSDLGSDLRSAGRYLGQALRLMVGLPDYDTYVAHMRTTHPDREPMTYEEFFRERQNARY
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
GSGAGKCC
CCCCCCCC
>Mature Secondary Structure
MFSDLGSDLRSAGRYLGQALRLMVGLPDYDTYVAHMRTTHPDREPMTYEEFFRERQNARY
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
GSGAGKCC
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]