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The map label for this gene is rarD [H]

Identifier: 189354014

GI number: 189354014

Start: 2343193

End: 2344092

Strand: Reverse

Name: rarD [H]

Synonym: BMULJ_05267

Alternate gene names: 189354014

Gene position: 2344092-2343193 (Counterclockwise)

Preceding gene: 189354015

Following gene: 189354013

Centisome position: 94.78

GC content: 70.33

Gene sequence:

>900_bases
GTGACGGGGTATCCGGAGGCCGGGCGCGGCGTGATGTTGTCGGTGGCGGCGTCGACGCTGTTCGCGCTGATGTCCGCGTA
TGCGAAATGGCTGACGCCGCTCACGGGCCTCGACATTTTCGCGTGGCGCGTGCTCTGGACCGCGCCCGGCGCGCTCGCGC
TGATCGCGCTGCGCGGCCGCTGGCCGGCGCTCGCGGCACTGCTCTCACGCAGCGTGCGCGACTGGCGGCTGCTCGTCGCG
CTGCCCGTGACCGCCGCGCTGCTCGGCCTGCAGCTGTGGCTGTTCCTGTGGGCGCCGCTGCACGGGCGCATGCTCGAGGT
GTCGCTCGGCTATTTCCTGCTACCGCTGACGATGGTGCTCGTCGGCCGCTTCTACTATCACGAACGGCTCGATCCGCTGC
AGTGGGCGGCCGTCGCCTGCGCGGCACTCGGCGTCGCGCACGAAGTCTGGGCGACGCGCGCGTTCGCGTGGCCGACGCTC
GTCGTCGCGCTCGGCTATCCGCCGTATTTCGTGCTGCGCCGGCGAATCAACGCCGATTCGCTGGCCGCGTTCGCGGTCGA
GATTGTGCTGCTGTGTCCGATCGCGGTCGCGATGGTCGCGACGAGCGGCACGCCGGTCGCGCCGCATCCGCTGCTGTGGT
CGACGCTGCTGCCGGGGCTCGGCGTGCTCAGCACGCTTGCGCTCGCGAGCTATCTGAAGGCGAGCCGGATGCTGCCGATG
GCGCTGTTCGGCATCCTCGGCTATGTCGAGCCCGTGCTGCTCGTCGCCGTATCGCTGTTGTTGCTCGGCGAGACGCTGAC
GGTCGCGAAGCTCGCGACGTACGGGCCGATCTGGGTCGCGGTTGCGTTGACCGCATGGCACAGCGCGATGCTGATGCGGC
GCTTGCCGACGCGCACCTGA

Upstream 100 bases:

>100_bases
GCTGCGGCACGGGCCGCCGGCCGCGCGCGTGACCGAAGTGACGTTCGAGGAACGGCAGACCGACAAGCGCTTCGAGCGCT
TTCAGCAGCAGTAAGCGCAC

Downstream 100 bases:

>100_bases
GCGCACGCCGTGCCGGCGCGCGTCGCCTCGAACACACCTCGCTCGACACACCTCACGCGCGAATCTGACCGTCGGCCGTC
GTCGCGCTGACGCCAAACTG

Product: chloramphenicol-sensitive protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTGYPEAGRGVMLSVAASTLFALMSAYAKWLTPLTGLDIFAWRVLWTAPGALALIALRGRWPALAALLSRSVRDWRLLVA
LPVTAALLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVLVGRFYYHERLDPLQWAAVACAALGVAHEVWATRAFAWPTL
VVALGYPPYFVLRRRINADSLAAFAVEIVLLCPIAVAMVATSGTPVAPHPLLWSTLLPGLGVLSTLALASYLKASRMLPM
ALFGILGYVEPVLLVAVSLLLLGETLTVAKLATYGPIWVAVALTAWHSAMLMRRLPTRT

Sequences:

>Translated_299_residues
MTGYPEAGRGVMLSVAASTLFALMSAYAKWLTPLTGLDIFAWRVLWTAPGALALIALRGRWPALAALLSRSVRDWRLLVA
LPVTAALLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVLVGRFYYHERLDPLQWAAVACAALGVAHEVWATRAFAWPTL
VVALGYPPYFVLRRRINADSLAAFAVEIVLLCPIAVAMVATSGTPVAPHPLLWSTLLPGLGVLSTLALASYLKASRMLPM
ALFGILGYVEPVLLVAVSLLLLGETLTVAKLATYGPIWVAVALTAWHSAMLMRRLPTRT
>Mature_298_residues
TGYPEAGRGVMLSVAASTLFALMSAYAKWLTPLTGLDIFAWRVLWTAPGALALIALRGRWPALAALLSRSVRDWRLLVAL
PVTAALLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVLVGRFYYHERLDPLQWAAVACAALGVAHEVWATRAFAWPTLV
VALGYPPYFVLRRRINADSLAAFAVEIVLLCPIAVAMVATSGTPVAPHPLLWSTLLPGLGVLSTLALASYLKASRMLPMA
LFGILGYVEPVLLVAVSLLLLGETLTVAKLATYGPIWVAVALTAWHSAMLMRRLPTRT

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=27.2108843537415, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32508; Mature: 32376

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGYPEAGRGVMLSVAASTLFALMSAYAKWLTPLTGLDIFAWRVLWTAPGALALIALRGR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCC
WPALAALLSRSVRDWRLLVALPVTAALLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVL
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VGRFYYHERLDPLQWAAVACAALGVAHEVWATRAFAWPTLVVALGYPPYFVLRRRINADS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHH
LAAFAVEIVLLCPIAVAMVATSGTPVAPHPLLWSTLLPGLGVLSTLALASYLKASRMLPM
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ALFGILGYVEPVLLVAVSLLLLGETLTVAKLATYGPIWVAVALTAWHSAMLMRRLPTRT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TGYPEAGRGVMLSVAASTLFALMSAYAKWLTPLTGLDIFAWRVLWTAPGALALIALRGR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCC
WPALAALLSRSVRDWRLLVALPVTAALLGLQLWLFLWAPLHGRMLEVSLGYFLLPLTMVL
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
VGRFYYHERLDPLQWAAVACAALGVAHEVWATRAFAWPTLVVALGYPPYFVLRRRINADS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHH
LAAFAVEIVLLCPIAVAMVATSGTPVAPHPLLWSTLLPGLGVLSTLALASYLKASRMLPM
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ALFGILGYVEPVLLVAVSLLLLGETLTVAKLATYGPIWVAVALTAWHSAMLMRRLPTRT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]