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The map label for this gene is oppB [H]

Identifier: 189354008

GI number: 189354008

Start: 2335942

End: 2336880

Strand: Reverse

Name: oppB [H]

Synonym: BMULJ_05261

Alternate gene names: 189354008

Gene position: 2336880-2335942 (Counterclockwise)

Preceding gene: 189354009

Following gene: 189354007

Centisome position: 94.49

GC content: 67.52

Gene sequence:

>939_bases
ATGCTGGCCTATGCCCTGAGGCGCACGTTGTGGGCGGTGCCGACGATCCTCGCGGTCGTCACCGTCTGCTACCTGCTGCT
GCACTTCACGCCCGGCGGCCCGTTCGATACGGAGAAGCAGCTGTCCGCCGCGACGCTCGCGAACCTGAACGCGAAGTACC
ACCTCGACGAACCGCTGTGGAAGCAGTACCTGCTGTATCTCGGCTCGCTGCTGCGCGGCGATCTCGGGCCGTCGTTCCGC
TACGTCGACTGGTCCGTGAACGATCTCGTGAAGAAGGCGCTGCCCGTGAGCCTCGGCGTGGGCGGCCTGTCGATTCCGCT
GTCGATCGTGCTCGGCGTGCTGCTCGGCACCGTCGCGGCCGTGCGCCGCGACAGCGTGATCGACCGCTTCGTGATGCTGA
TCGGCAACTTCGGCAACGTCGTGCCGCCGTTCGTGCTCGGCCCCGTGCTCGTCTGGATCTTCGCGATCCTGCTGAAGACC
TCGGCCGGCAACGGCTGGCTGCCGGCCGGCGGCTGGGGCGACGGCGGCTGGCAGTACCGCTTGCTGCCGATCGTGCTGCT
GACCTTCATCAACGTGTCGCTGCTCGCGCGCGTGATGCGCGGCTCGATGATCGAGACGCTGTCGAGCAACTACATCCGCA
CCGCGCGCGCGAAGGGGCTGCCCGGCTCGACGATCGTGCTGCGCCACGCGCTGAAGCCCGCGCTGATGCCGGTCGTGTCG
CTGTTCGGCACGGTCTGCATCACGTCGATCACGGCGGCCGTCGTCACCGAATCGGTGTTCGCGCTGCCGGGGCTCGGGCA
GCTCGTCGTGAACGGCGCGATCAATCGCGACTACACGCTGGTGCTCGGCCTCGTCGTGCTGACGACCGTCTGCGCGGTGC
TGTTCAACCTGCTGATCGACCTCGCCTACGCATGGCTCGATCCGCGCATCCGTTACTGA

Upstream 100 bases:

>100_bases
GTCTCGTGAAGCCGTACGTCGGCGGCTATTCGCTGAAGAACGTGATCGACATGCGCGCGTCGCAGGACATGTATCTGATC
AAGCACTGAGCGGAGCGATC

Downstream 100 bases:

>100_bases
GCGAGGCCCTGCGATGACTCCCACTACGCCAGCCGTCGGTCTGCCCGCGCAGACCGATACGCCGCCGCGTTCGCGCTCGC
CGCTGGCGCTCGCGTTCGCG

Product: peptide/nickel transport system permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDTEKQLSAATLANLNAKYHLDEPLWKQYLLYLGSLLRGDLGPSFR
YVDWSVNDLVKKALPVSLGVGGLSIPLSIVLGVLLGTVAAVRRDSVIDRFVMLIGNFGNVVPPFVLGPVLVWIFAILLKT
SAGNGWLPAGGWGDGGWQYRLLPIVLLTFINVSLLARVMRGSMIETLSSNYIRTARAKGLPGSTIVLRHALKPALMPVVS
LFGTVCITSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLIDLAYAWLDPRIRY

Sequences:

>Translated_312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDTEKQLSAATLANLNAKYHLDEPLWKQYLLYLGSLLRGDLGPSFR
YVDWSVNDLVKKALPVSLGVGGLSIPLSIVLGVLLGTVAAVRRDSVIDRFVMLIGNFGNVVPPFVLGPVLVWIFAILLKT
SAGNGWLPAGGWGDGGWQYRLLPIVLLTFINVSLLARVMRGSMIETLSSNYIRTARAKGLPGSTIVLRHALKPALMPVVS
LFGTVCITSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLIDLAYAWLDPRIRY
>Mature_312_residues
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDTEKQLSAATLANLNAKYHLDEPLWKQYLLYLGSLLRGDLGPSFR
YVDWSVNDLVKKALPVSLGVGGLSIPLSIVLGVLLGTVAAVRRDSVIDRFVMLIGNFGNVVPPFVLGPVLVWIFAILLKT
SAGNGWLPAGGWGDGGWQYRLLPIVLLTFINVSLLARVMRGSMIETLSSNYIRTARAKGLPGSTIVLRHALKPALMPVVS
LFGTVCITSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLIDLAYAWLDPRIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=312, Percent_Identity=48.0769230769231, Blast_Score=310, Evalue=5e-86,
Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=32.484076433121, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=31.3609467455621, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=33.8607594936709, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=33.434650455927, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1788504, Length=367, Percent_Identity=25.8855585831063, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787550, Length=342, Percent_Identity=25.4385964912281, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33800; Mature: 33800

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDTEKQLSAATLANLNAKYHLDEPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH
KQYLLYLGSLLRGDLGPSFRYVDWSVNDLVKKALPVSLGVGGLSIPLSIVLGVLLGTVAA
HHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH
VRRDSVIDRFVMLIGNFGNVVPPFVLGPVLVWIFAILLKTSAGNGWLPAGGWGDGGWQYR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LLPIVLLTFINVSLLARVMRGSMIETLSSNYIRTARAKGLPGSTIVLRHALKPALMPVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LFGTVCITSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLID
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAYAWLDPRIRY
HHHHHHCCCCCC
>Mature Secondary Structure
MLAYALRRTLWAVPTILAVVTVCYLLLHFTPGGPFDTEKQLSAATLANLNAKYHLDEPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH
KQYLLYLGSLLRGDLGPSFRYVDWSVNDLVKKALPVSLGVGGLSIPLSIVLGVLLGTVAA
HHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHH
VRRDSVIDRFVMLIGNFGNVVPPFVLGPVLVWIFAILLKTSAGNGWLPAGGWGDGGWQYR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LLPIVLLTFINVSLLARVMRGSMIETLSSNYIRTARAKGLPGSTIVLRHALKPALMPVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LFGTVCITSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTVCAVLFNLLID
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAYAWLDPRIRY
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]