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The map label for this gene is oprD [H]

Identifier: 189354004

GI number: 189354004

Start: 2331380

End: 2332855

Strand: Reverse

Name: oprD [H]

Synonym: BMULJ_05257

Alternate gene names: 189354004

Gene position: 2332855-2331380 (Counterclockwise)

Preceding gene: 189354005

Following gene: 189354000

Centisome position: 94.33

GC content: 65.58

Gene sequence:

>1476_bases
ATGAAAAAGCAGAAGACGATCGGGACGGCATCGAAGATGCTGCTTGCATGGGGACTGCCGGCGCTCGCCGGTGTCTCGCT
GACGGGCGTCGCGCGCGCCGACGACGCGGCGCCCGCGCCGCTGACGGTCGCGCAGGCCGCGCCGGCCGCCGGCGCGAGTG
CGAGCGTCGCACAGGCGACGACGCCGAACGCCGTTGTCAACGCGGAGGCCAGCCAGGCCGTCACGCCGTCCGACGAGCAA
CCGTCCGCGCAATCGAAGTCGAAGGGCTTCATCGCCGACAGCCATCTCGACTTCCTGTTCCGCAACTATGCGGACGTGCT
CGACAGCAAGGGCGGACCGCACCGTCACGCGTGGATCCAGGGCGTGATGGCGAACTTCGAGTCCGGCTATACGACGGGCC
TGATCGGTATCGGCTTCGACGCATCGCTGTATGCGGCGCTGAAGCTCGACGGCGGCGCGGGCGCGGGCAGCATGGCGCAC
ATCGCGAAGGGTGGCGGCGGCTCGAACCAGCTCGCGTGGGCCTATCCGGGCATCTACGACGTCAAGGCGCGCATCTCGAA
CACGGTGATCAAGTACGGTCTGCAGGCCGTCGACAACCCGTTCATGGAGCAGCACGACAACCGTGCGCTGCCGCCGACGT
TCCTCGGCGCGACGATCGTCAGCAACGAATTCAAGAACGTGATGCTCGAAGCGGGCAGCTTCACGAAGACCGACGCGCGC
GGCCACACGACGCTCACGAACCTGACGACGCAGTACGGCGGTACGCGCGTGAACCGGATCACGTATGTGGGCGGCACGTG
GGACTACTCGCCGAACGGCGAAGTCGCGCTGTACGCAAACCAGGCCGACGACGTGTGGCACCAGTACTACGCGTCGGTGA
AGCACAGCATCGGCAGCCCGCAGACGATCAAGTGGACGGGCTTCGGCAACGTCTATTCGACGCACGACACCGGCGACGCG
CTGCAGGGCAAGATCAACAACAACGCGTACAGCCTGTCGCTCGCCGCGCAGCACGGCCCGCACGAGCTGCTGCTCGCGTA
TCAGCAGATTCTCGGCGACCAGTTCTTCGACTATCTGAACGAAACGAACGGCATCTTCCTCGCGAACTCGATGGACGTCG
ACTACAACGCGCCGCATGAAAAGTCGCTGCAGCTGCGCTACACGTTCTACGGCAAGGAAGCGGGGCTGCCGGGCTTCAAG
GCGATGGTATGGGGCGTGACGGGCTGGGGCGCGGACGGCAGCGCGGGCGCGGCGAACGATCCGAGCCACTCGAGCATCTA
CTGGAGCAACGGCGCGCCGGTGCAAGGCCGTCACCACGAGTTCGGCTTCATTCCGTCGTACACGTTCCAGAGCGGCAAGC
TGAAGGACACGAAGGTCACGTTCATCGCGATGTGGCACAACGGCTCCGCGCACTACTCCGATGCGACGAACCGCGAGTAC
CGTCTGGTCGTGAACCTGCCGCTGCACGCGTTCTGA

Upstream 100 bases:

>100_bases
GCGTCGCGGGTACAGGCGCGTCCGTAGCCGGTCGCGCCGGGTGGGGGCCGGGCGCGGATCGCGACCGGCGGGACGACATC
AACACAAGAAGAGAACCACG

Downstream 100 bases:

>100_bases
TCGCATGGCGCCGGCGCGCGCCGCCGCGTCGCCGCTGCGCGGCGCGCGCTTACGCGGGCTTGTGCAGCCCGGCGACCGGC
TCGTTCGCGGCCGGCGGCAG

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKKQKTIGTASKMLLAWGLPALAGVSLTGVARADDAAPAPLTVAQAAPAAGASASVAQATTPNAVVNAEASQAVTPSDEQ
PSAQSKSKGFIADSHLDFLFRNYADVLDSKGGPHRHAWIQGVMANFESGYTTGLIGIGFDASLYAALKLDGGAGAGSMAH
IAKGGGGSNQLAWAYPGIYDVKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTDAR
GHTTLTNLTTQYGGTRVNRITYVGGTWDYSPNGEVALYANQADDVWHQYYASVKHSIGSPQTIKWTGFGNVYSTHDTGDA
LQGKINNNAYSLSLAAQHGPHELLLAYQQILGDQFFDYLNETNGIFLANSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFK
AMVWGVTGWGADGSAGAANDPSHSSIYWSNGAPVQGRHHEFGFIPSYTFQSGKLKDTKVTFIAMWHNGSAHYSDATNREY
RLVVNLPLHAF

Sequences:

>Translated_491_residues
MKKQKTIGTASKMLLAWGLPALAGVSLTGVARADDAAPAPLTVAQAAPAAGASASVAQATTPNAVVNAEASQAVTPSDEQ
PSAQSKSKGFIADSHLDFLFRNYADVLDSKGGPHRHAWIQGVMANFESGYTTGLIGIGFDASLYAALKLDGGAGAGSMAH
IAKGGGGSNQLAWAYPGIYDVKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTDAR
GHTTLTNLTTQYGGTRVNRITYVGGTWDYSPNGEVALYANQADDVWHQYYASVKHSIGSPQTIKWTGFGNVYSTHDTGDA
LQGKINNNAYSLSLAAQHGPHELLLAYQQILGDQFFDYLNETNGIFLANSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFK
AMVWGVTGWGADGSAGAANDPSHSSIYWSNGAPVQGRHHEFGFIPSYTFQSGKLKDTKVTFIAMWHNGSAHYSDATNREY
RLVVNLPLHAF
>Mature_491_residues
MKKQKTIGTASKMLLAWGLPALAGVSLTGVARADDAAPAPLTVAQAAPAAGASASVAQATTPNAVVNAEASQAVTPSDEQ
PSAQSKSKGFIADSHLDFLFRNYADVLDSKGGPHRHAWIQGVMANFESGYTTGLIGIGFDASLYAALKLDGGAGAGSMAH
IAKGGGGSNQLAWAYPGIYDVKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTDAR
GHTTLTNLTTQYGGTRVNRITYVGGTWDYSPNGEVALYANQADDVWHQYYASVKHSIGSPQTIKWTGFGNVYSTHDTGDA
LQGKINNNAYSLSLAAQHGPHELLLAYQQILGDQFFDYLNETNGIFLANSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFK
AMVWGVTGWGADGSAGAANDPSHSSIYWSNGAPVQGRHHEFGFIPSYTFQSGKLKDTKVTFIAMWHNGSAHYSDATNREY
RLVVNLPLHAF

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52531; Mature: 52531

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQKTIGTASKMLLAWGLPALAGVSLTGVARADDAAPAPLTVAQAAPAAGASASVAQAT
CCCCCCCCHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHCCC
TPNAVVNAEASQAVTPSDEQPSAQSKSKGFIADSHLDFLFRNYADVLDSKGGPHRHAWIQ
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHH
GVMANFESGYTTGLIGIGFDASLYAALKLDGGAGAGSMAHIAKGGGGSNQLAWAYPGIYD
HHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCHHHEECCCCCCCCEEEECCCEEE
VKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTDAR
HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCC
GHTTLTNLTTQYGGTRVNRITYVGGTWDYSPNGEVALYANQADDVWHQYYASVKHSIGSP
CCEEEEHHHHHCCCEEEEEEEEECCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
QTIKWTGFGNVYSTHDTGDALQGKINNNAYSLSLAAQHGPHELLLAYQQILGDQFFDYLN
CEEEEECCCCEEECCCCCCHHCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
ETNGIFLANSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGADGSAGAAND
CCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCC
PSHSSIYWSNGAPVQGRHHEFGFIPSYTFQSGKLKDTKVTFIAMWHNGSAHYSDATNREY
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
RLVVNLPLHAF
EEEEECCCCCC
>Mature Secondary Structure
MKKQKTIGTASKMLLAWGLPALAGVSLTGVARADDAAPAPLTVAQAAPAAGASASVAQAT
CCCCCCCCHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCHHCCC
TPNAVVNAEASQAVTPSDEQPSAQSKSKGFIADSHLDFLFRNYADVLDSKGGPHRHAWIQ
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHH
GVMANFESGYTTGLIGIGFDASLYAALKLDGGAGAGSMAHIAKGGGGSNQLAWAYPGIYD
HHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCHHHEECCCCCCCCEEEECCCEEE
VKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTDAR
HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCC
GHTTLTNLTTQYGGTRVNRITYVGGTWDYSPNGEVALYANQADDVWHQYYASVKHSIGSP
CCEEEEHHHHHCCCEEEEEEEEECCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
QTIKWTGFGNVYSTHDTGDALQGKINNNAYSLSLAAQHGPHELLLAYQQILGDQFFDYLN
CEEEEECCCCEEECCCCCCHHCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
ETNGIFLANSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGADGSAGAAND
CCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCC
PSHSSIYWSNGAPVQGRHHEFGFIPSYTFQSGKLKDTKVTFIAMWHNGSAHYSDATNREY
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
RLVVNLPLHAF
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]