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The map label for this gene is yjiR [C]

Identifier: 189353874

GI number: 189353874

Start: 2179811

End: 2181139

Strand: Direct

Name: yjiR [C]

Synonym: BMULJ_05126

Alternate gene names: 189353874

Gene position: 2179811-2181139 (Clockwise)

Preceding gene: 189353871

Following gene: 189353876

Centisome position: 88.14

GC content: 67.12

Gene sequence:

>1329_bases
ATGGCCGAACCTCGCTACAAATCCATCGTCGACGATCTGGTCGGCCACATACGCGCAGGCACGCTGCCGCCCGGCACGCA
GCTCCCCACGATCCGCGCACTGATGAAGCAGCACGGCGTCGCGCTGGCGACCGCGTCGCGCGTGTACGGCGAACTCGAAG
CGATGGGGCTCGTAGTCGGCGAAGTGGGAAGAGGCACCTTCGTGCGCGATACGTCGTTGCCGCGCGGACTCGGGCTCGAG
CAAAATCCCGCGCGCTCCGGGGCGATCGATCTGACCTTCAACTATCCGTCGCTGCCCGGGCAGGTCGAGTTGCTGCGCAC
GGGGTTGCGCACGCTCGCCGCGTCGGGCGATCTCGATGCACTGCTGCATTCCGCGCCGCAAGGCGGGCGCAGGCATGAAC
GGCAAACCGTCGCGAAACATCTGCGCAATCGCGACATCCGCGTGCCCGGCGAACAGGTGCTGATCGTCAACGGCGCGCAG
CAGGGGCTCGCCGTGACGGTCATGGCGCTACTGCAGCCCGGCGACATTCTGGCCATCGACGCGCTGACCTACCCCGGCAT
GAAAGCCCTGGCGCAACTGCACCGGCTCGACCTCGCGCCGCTGCCGTCCTGCGCGGGCGGCGGTCCGGATCTGGATCGGC
TCGACGCACTCTGCCGGCGACGCCCCGTGCGCGCACTCTATACGATGCCCACGCTGCACAATCCGCTCGGCTGGGTGATG
AGCGAACCGGACCGGATTCGCCTCGCCGAACTCGCCGAACGTCACGACTTTCTCATCATCGAGGACGGCGCCTACGCGTT
CCTCGCCGAGCCCGCGCCGAAGCCCGTCTTCACGTATGCGCCCGAGCGGACGGTCTACGTATCGGGGCTGTCGAAAAGCG
TCGCATCGGGATTGAGGATGGGCTTCGTCGCGGCGCCCGAACATCTGATACCGGCGCTCGAGCGCGCGATCCGCGTATCG
ACATGGAACACGCCGTCGCTCACGGTCGCGTTGGCGTGTCAGTGGATCGAAAGCGGAATCGTCGATACGCTCGAGGACCA
AAAGCGCAAGGACGCGCGGCGCAGGCAGTCGCTCGCGCGCCGCATCCTGCGCGGCGGCGCGATCGTCGCGCACCCGAATT
CCTACTACGTGTGGCTCGAATTGCCCGACGACTTGCGCGCCGATCGTGTCGCGGCCGATCTCGAACGTGACGGTGTACTC
GTGACCACGGCCGAGCCGTTCTCGACCACGCCGAATACGCGTCATGCCCTTCGCCTGGCGCTCGGTTCGCTGTCGCTCGA
TGCGCTCGGCGATGCTTTGCACAAGGTTCGCCGAGCCGTGATCGGCTGA

Upstream 100 bases:

>100_bases
AGGTCGAGGTGTCGATCATGCTGGCGGCCGTTTGCGTGAGTGAAGATCCCAGCGTAATCTCTGCAGGCGATACAAACAAA
AAATTGTTCTAGATACATCG

Downstream 100 bases:

>100_bases
CGCGGTTCGCGGAATCGGATGATCGGCGACGCGTCGTACGGTTTGCGAACGTGCCGTTGTCGCCGGGAAATCGGCTGGCC
GTCAATCGCCGCACGGCCAA

Product: transcriptional MocR family regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MAEPRYKSIVDDLVGHIRAGTLPPGTQLPTIRALMKQHGVALATASRVYGELEAMGLVVGEVGRGTFVRDTSLPRGLGLE
QNPARSGAIDLTFNYPSLPGQVELLRTGLRTLAASGDLDALLHSAPQGGRRHERQTVAKHLRNRDIRVPGEQVLIVNGAQ
QGLAVTVMALLQPGDILAIDALTYPGMKALAQLHRLDLAPLPSCAGGGPDLDRLDALCRRRPVRALYTMPTLHNPLGWVM
SEPDRIRLAELAERHDFLIIEDGAYAFLAEPAPKPVFTYAPERTVYVSGLSKSVASGLRMGFVAAPEHLIPALERAIRVS
TWNTPSLTVALACQWIESGIVDTLEDQKRKDARRRQSLARRILRGGAIVAHPNSYYVWLELPDDLRADRVAADLERDGVL
VTTAEPFSTTPNTRHALRLALGSLSLDALGDALHKVRRAVIG

Sequences:

>Translated_442_residues
MAEPRYKSIVDDLVGHIRAGTLPPGTQLPTIRALMKQHGVALATASRVYGELEAMGLVVGEVGRGTFVRDTSLPRGLGLE
QNPARSGAIDLTFNYPSLPGQVELLRTGLRTLAASGDLDALLHSAPQGGRRHERQTVAKHLRNRDIRVPGEQVLIVNGAQ
QGLAVTVMALLQPGDILAIDALTYPGMKALAQLHRLDLAPLPSCAGGGPDLDRLDALCRRRPVRALYTMPTLHNPLGWVM
SEPDRIRLAELAERHDFLIIEDGAYAFLAEPAPKPVFTYAPERTVYVSGLSKSVASGLRMGFVAAPEHLIPALERAIRVS
TWNTPSLTVALACQWIESGIVDTLEDQKRKDARRRQSLARRILRGGAIVAHPNSYYVWLELPDDLRADRVAADLERDGVL
VTTAEPFSTTPNTRHALRLALGSLSLDALGDALHKVRRAVIG
>Mature_441_residues
AEPRYKSIVDDLVGHIRAGTLPPGTQLPTIRALMKQHGVALATASRVYGELEAMGLVVGEVGRGTFVRDTSLPRGLGLEQ
NPARSGAIDLTFNYPSLPGQVELLRTGLRTLAASGDLDALLHSAPQGGRRHERQTVAKHLRNRDIRVPGEQVLIVNGAQQ
GLAVTVMALLQPGDILAIDALTYPGMKALAQLHRLDLAPLPSCAGGGPDLDRLDALCRRRPVRALYTMPTLHNPLGWVMS
EPDRIRLAELAERHDFLIIEDGAYAFLAEPAPKPVFTYAPERTVYVSGLSKSVASGLRMGFVAAPEHLIPALERAIRVST
WNTPSLTVALACQWIESGIVDTLEDQKRKDARRRQSLARRILRGGAIVAHPNSYYVWLELPDDLRADRVAADLERDGVLV
TTAEPFSTTPNTRHALRLALGSLSLDALGDALHKVRRAVIG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=223, Percent_Identity=30.9417040358744, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI33469970, Length=223, Percent_Identity=30.9417040358744, Blast_Score=83, Evalue=6e-16,
Organism=Escherichia coli, GI1790797, Length=473, Percent_Identity=24.3128964059197, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI1787710, Length=449, Percent_Identity=24.4988864142539, Blast_Score=121, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48012; Mature: 47881

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPRYKSIVDDLVGHIRAGTLPPGTQLPTIRALMKQHGVALATASRVYGELEAMGLVVG
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHEE
EVGRGTFVRDTSLPRGLGLEQNPARSGAIDLTFNYPSLPGQVELLRTGLRTLAASGDLDA
CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHH
LLHSAPQGGRRHERQTVAKHLRNRDIRVPGEQVLIVNGAQQGLAVTVMALLQPGDILAID
HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
ALTYPGMKALAQLHRLDLAPLPSCAGGGPDLDRLDALCRRRPVRALYTMPTLHNPLGWVM
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHEECCCCCCCCCHHC
SEPDRIRLAELAERHDFLIIEDGAYAFLAEPAPKPVFTYAPERTVYVSGLSKSVASGLRM
CCCCCCHHHHHHHHCCEEEEECCCEEEEECCCCCCEEEECCCCEEEECCHHHHHHHHHHH
GFVAAPEHLIPALERAIRVSTWNTPSLTVALACQWIESGIVDTLEDQKRKDARRRQSLAR
CHHCCCHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RILRGGAIVAHPNSYYVWLELPDDLRADRVAADLERDGVLVTTAEPFSTTPNTRHALRLA
HHHHCCEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH
LGSLSLDALGDALHKVRRAVIG
HHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEPRYKSIVDDLVGHIRAGTLPPGTQLPTIRALMKQHGVALATASRVYGELEAMGLVVG
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHEE
EVGRGTFVRDTSLPRGLGLEQNPARSGAIDLTFNYPSLPGQVELLRTGLRTLAASGDLDA
CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHH
LLHSAPQGGRRHERQTVAKHLRNRDIRVPGEQVLIVNGAQQGLAVTVMALLQPGDILAID
HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEE
ALTYPGMKALAQLHRLDLAPLPSCAGGGPDLDRLDALCRRRPVRALYTMPTLHNPLGWVM
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHEECCCCCCCCCHHC
SEPDRIRLAELAERHDFLIIEDGAYAFLAEPAPKPVFTYAPERTVYVSGLSKSVASGLRM
CCCCCCHHHHHHHHCCEEEEECCCEEEEECCCCCCEEEECCCCEEEECCHHHHHHHHHHH
GFVAAPEHLIPALERAIRVSTWNTPSLTVALACQWIESGIVDTLEDQKRKDARRRQSLAR
CHHCCCHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
RILRGGAIVAHPNSYYVWLELPDDLRADRVAADLERDGVLVTTAEPFSTTPNTRHALRLA
HHHHCCEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH
LGSLSLDALGDALHKVRRAVIG
HHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]