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The map label for this gene is fadR [H]

Identifier: 189353804

GI number: 189353804

Start: 2097312

End: 2098034

Strand: Direct

Name: fadR [H]

Synonym: BMULJ_05051

Alternate gene names: 189353804

Gene position: 2097312-2098034 (Clockwise)

Preceding gene: 189353796

Following gene: 189353807

Centisome position: 84.8

GC content: 68.88

Gene sequence:

>723_bases
ATGACCGCCACCGCCAAAGCCGAGCGCGCCGACGCGCCGCGCGCGCCCGCCGGGCGCAAATCCCAGCAGCGCGTGCAGGA
CATTCTGCGGGCCGGGCGCGACGTGTTCGCCGAAAAAGGTTACGAGCACGCGACGGCCGCCGAGATCGCGCAACGCGTCG
GCGTGTCGGAGGCGACCGTGTTCAGTTATTTCCGCGGCAAGCGCGAGCTGTGCGCGCGCGTGATCGCCGACTGGTATGAC
GAAATCATCGCGGCGTTCGAGCATGGGATGCCACAGGAGGCAACCGTGCAGCAGCAGTTCGCGTTCATCGTGCGTACGCA
TCTGCGGCTGATGCTCGTGAACGGCACGGGGCTCTGCGCACTGGTGCTGTCCGAAGGCCGCGCGAAGCAGCACGCGCTCA
GCGACGAGCTCACCGCGCTGCAGCGCCGCTACACGGCGCCGCTGATGAGCGTGCTCGCGCGCGGCCAGGCGGCCGGGCAG
GTGCGCCGCGACATGCCGCTGAGCCTGTTGCGCTCGATAGTGTTCGGTCCGATCGAGCACGTGCTGTGGGACGCGATCCT
CGGGCACCGCAAGCTCGATACGGAAGCGACCGCGACGCAGCTGATCGACATGCTCTGGGCGGCCGTGCAGCCGCCCGCGC
CCGAGCAGGCCGCACTCGTGCGGTTCAAAAACGAGGTCGCGGAGGCGATGAAGCGGCTGGAAGCGTCGCCGGAACGAGAA
TAG

Upstream 100 bases:

>100_bases
AAATTTTGCACAGTTTCGCGCGGCGTCGCGGTGGGCGTCAATAGTTTTTTGAGTGACACTCAGTTATCATGCGGAGATGA
CAGCCGCTACCGCCCGCACC

Downstream 100 bases:

>100_bases
GTCGGCGCGTCACGCCGGGCGCGGACAATCGCCCGCGCCGTCCATCACGGCCGCCAGCGGTACACGACAAGACTCGAGCC
GTTGTAATTGTCCTTCGTGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTATAKAERADAPRAPAGRKSQQRVQDILRAGRDVFAEKGYEHATAAEIAQRVGVSEATVFSYFRGKRELCARVIADWYD
EIIAAFEHGMPQEATVQQQFAFIVRTHLRLMLVNGTGLCALVLSEGRAKQHALSDELTALQRRYTAPLMSVLARGQAAGQ
VRRDMPLSLLRSIVFGPIEHVLWDAILGHRKLDTEATATQLIDMLWAAVQPPAPEQAALVRFKNEVAEAMKRLEASPERE

Sequences:

>Translated_240_residues
MTATAKAERADAPRAPAGRKSQQRVQDILRAGRDVFAEKGYEHATAAEIAQRVGVSEATVFSYFRGKRELCARVIADWYD
EIIAAFEHGMPQEATVQQQFAFIVRTHLRLMLVNGTGLCALVLSEGRAKQHALSDELTALQRRYTAPLMSVLARGQAAGQ
VRRDMPLSLLRSIVFGPIEHVLWDAILGHRKLDTEATATQLIDMLWAAVQPPAPEQAALVRFKNEVAEAMKRLEASPERE
>Mature_239_residues
TATAKAERADAPRAPAGRKSQQRVQDILRAGRDVFAEKGYEHATAAEIAQRVGVSEATVFSYFRGKRELCARVIADWYDE
IIAAFEHGMPQEATVQQQFAFIVRTHLRLMLVNGTGLCALVLSEGRAKQHALSDELTALQRRYTAPLMSVLARGQAAGQV
RRDMPLSLLRSIVFGPIEHVLWDAILGHRKLDTEATATQLIDMLWAAVQPPAPEQAALVRFKNEVAEAMKRLEASPERE

Specific function: Transcriptional regulator in fatty acid degradation. Represses transcription of genes required for fatty acid transport and beta-oxidation, including acdA, fadA, fadB, fadE, fadF, fadG, fadH, fadM, fadN, lcfA and lcfB. Binding of FadR to DNA is specifical

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR013570 [H]

Pfam domain/function: PF08359 TetR_C_4; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26628; Mature: 26497

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATAKAERADAPRAPAGRKSQQRVQDILRAGRDVFAEKGYEHATAAEIAQRVGVSEATV
CCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH
FSYFRGKRELCARVIADWYDEIIAAFEHGMPQEATVQQQFAFIVRTHLRLMLVNGTGLCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCCHHH
LVLSEGRAKQHALSDELTALQRRYTAPLMSVLARGQAAGQVRRDMPLSLLRSIVFGPIEH
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
VLWDAILGHRKLDTEATATQLIDMLWAAVQPPAPEQAALVRFKNEVAEAMKRLEASPERE
HHHHHHHCCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TATAKAERADAPRAPAGRKSQQRVQDILRAGRDVFAEKGYEHATAAEIAQRVGVSEATV
CCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH
FSYFRGKRELCARVIADWYDEIIAAFEHGMPQEATVQQQFAFIVRTHLRLMLVNGTGLCA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCCHHH
LVLSEGRAKQHALSDELTALQRRYTAPLMSVLARGQAAGQVRRDMPLSLLRSIVFGPIEH
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
VLWDAILGHRKLDTEATATQLIDMLWAAVQPPAPEQAALVRFKNEVAEAMKRLEASPERE
HHHHHHHCCHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]