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The map label for this gene is ompA [H]

Identifier: 189353793

GI number: 189353793

Start: 2083122

End: 2083784

Strand: Direct

Name: ompA [H]

Synonym: BMULJ_05040

Alternate gene names: 189353793

Gene position: 2083122-2083784 (Clockwise)

Preceding gene: 189353792

Following gene: 189353794

Centisome position: 84.23

GC content: 73.0

Gene sequence:

>663_bases
GTGAACAAACTCGCTCTTGCGCTCGCACTGTCGAGCGCGGCGCTCGCCGCCTGCTCGACGGCATCGGGCCCGACCTTCAG
CGCCTCCGAACTGCAGCCGCGCGATGGCGTGCGGACGTTCCAGGTGGACTGCCACGGCCTGCTGTCCGGCCCGCAAACCT
GCATGAAGGCCGCGCGGAAGATCTGCGGCGAACAACCCGTGCGCGCCGTCGACACGATGCGCGCGCTGCGCGACGGCAGC
GATCCGGCCACGCTGGTGTTCCAGTGCGGCGCCCCGCCGGCCGACGCCGCACCGGCCGCCGAGCCCGCGCCCGCCGCGGT
CGAACACGTGAGCCTCGCCGGCGACGCGCTGTTCGCCAGCGGCCTCGCGACGCTGACGCCGGCCGCCCGCGCGTCGCTCG
ACAAGCTGCTGAACGCGCACGCCGACCGCTCGTACACGCAGGTCAGCGTCACCGGCTACACGGATTCGGTCGGCAGCGAC
GCATCGAATCTCGCGCTGTCGAAGCGGCGGGCGGAAGCCGTCGCCGCCTATCTGCAGCAGCGCGGGCTGAATGCGCGCAC
GCTGACGGTGACGGGCCGCGGCAGCGCCGATCCGATCGCGTCGAACGCGACGGCCGAAGGCCGCGCGACCAACCGCCGCG
TGGAAATCTCGCTGCAGCGCTGA

Upstream 100 bases:

>100_bases
TCGGCCAGCGAGGCCGGCCGCGTCGCGGCGGCCGGCTGCACGATGCGCGCGGCACGATCTGCGGCGCGCTTGTGTCCATT
CAGGATTCGAGGACGAAACC

Downstream 100 bases:

>100_bases
CGCGCCGCGGCCGGCATGGCCGACATATCGGCCGGCGCGACGGCCGTGCATGAACCTGCCACACGTCGCCGCGAACGGCC
GCCCCACTCCACAAACCGGC

Product: OmpA/MotB family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNKLALALALSSAALAACSTASGPTFSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARKICGEQPVRAVDTMRALRDGS
DPATLVFQCGAPPADAAPAAEPAPAAVEHVSLAGDALFASGLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSVGSD
ASNLALSKRRAEAVAAYLQQRGLNARTLTVTGRGSADPIASNATAEGRATNRRVEISLQR

Sequences:

>Translated_220_residues
MNKLALALALSSAALAACSTASGPTFSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARKICGEQPVRAVDTMRALRDGS
DPATLVFQCGAPPADAAPAAEPAPAAVEHVSLAGDALFASGLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSVGSD
ASNLALSKRRAEAVAAYLQQRGLNARTLTVTGRGSADPIASNATAEGRATNRRVEISLQR
>Mature_220_residues
MNKLALALALSSAALAACSTASGPTFSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARKICGEQPVRAVDTMRALRDGS
DPATLVFQCGAPPADAAPAAEPAPAAVEHVSLAGDALFASGLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSVGSD
ASNLALSKRRAEAVAAYLQQRGLNARTLTVTGRGSADPIASNATAEGRATNRRVEISLQR

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=109, Percent_Identity=43.1192660550459, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787191, Length=123, Percent_Identity=37.3983739837398, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788957, Length=139, Percent_Identity=33.0935251798561, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22575; Mature: 22575

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLALALALSSAALAACSTASGPTFSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARK
CCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHH
ICGEQPVRAVDTMRALRDGSDPATLVFQCGAPPADAAPAAEPAPAAVEHVSLAGDALFAS
HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSVGSDASNLALSKRRAEAVAAYLQQ
CHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGLNARTLTVTGRGSADPIASNATAEGRATNRRVEISLQR
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNKLALALALSSAALAACSTASGPTFSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARK
CCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHH
ICGEQPVRAVDTMRALRDGSDPATLVFQCGAPPADAAPAAEPAPAAVEHVSLAGDALFAS
HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
GLATLTPAARASLDKLLNAHADRSYTQVSVTGYTDSVGSDASNLALSKRRAEAVAAYLQQ
CHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGLNARTLTVTGRGSADPIASNATAEGRATNRRVEISLQR
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]