Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 189353738

GI number: 189353738

Start: 2009634

End: 2010395

Strand: Direct

Name: yadH [H]

Synonym: BMULJ_04983

Alternate gene names: 189353738

Gene position: 2009634-2010395 (Clockwise)

Preceding gene: 189353737

Following gene: 189353739

Centisome position: 81.26

GC content: 63.25

Gene sequence:

>762_bases
ATGAACTTCCACGCGATCCGCGCGATCTATCGCGCCGAAATGGCGCGCACGCGCCGCACGCTGATGCAGAGCATCATCGC
GCCGGTGATCTCGACGTCGCTCTACTTCGTCGTGTTCGGGTCGGCGATCGGCTCGCGCATCAGCGACGTAAACGGCATCG
GCTACGGCTCGTTCATCGTGCCGGGCCTCGTGATGCTGTCGCTGCTGTCGCAGAGCATCTCGAACGCGTCGTTCGGCATC
TACTTCCCGCGCTTCACGGGCACGATCTACGAGGTGCTGTCGGCGCCCGTCTCGCATTGGGAAATCGTGACCGCCTACGT
CGGCGCGGCCGCGTCGAAGTCGATCCTGCTCGGGCTGATCATCCTCGCGACCGCCGCGCTGTTCGTGCCGCTGCACATCC
TGCATCCGTTCTGGATGGTGCTGTTTCTCGTGCTCACCTCCGTCACGTTCAGCCTGTTCGGCTTCGTGATCGGCATCTGG
GCCGACAGCTTCGAGAAGCTGCAGCTCGTGCCGTTGCTGATCATCACGCCGCTCACGTTCCTCGGCGGCAGCTTCTATTC
GGTCGACATGCTGCCGCCCGCGTGGCGCGTGATCACGCTGTTCAATCCGATCGTCTATCTCGTCAGCGGCTTTCGCTGGT
CGTTCTACGGGCTCGCGGACGTACACGTCGGCATCAGCCTCGCCGCGACCTCGCTGTTCCTCGTGATCCTGCTCGCGATC
GTCGCGTGGATGTTCCGCACGGGCTACAAGCTGAAGAACTGA

Upstream 100 bases:

>100_bases
GCGACCTGCACACGACGCAGAGCTCGCTCGAGGACATCTTCGTCAGCCTGATCGACAACCGCCGCAACGGCGCACAACGG
GCATAACCATCATGGCGCAC

Downstream 100 bases:

>100_bases
GCGCGCACGCGTCGCCGGCGATGACGCATTTGTTCAAGCCGACGACGCTTTTCCTCCAATGCGGCCTTTTGTGGTCGCGT
CTACTGAAAGCTCGAAGCCT

Product: ABC-2 type transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNFHAIRAIYRAEMARTRRTLMQSIIAPVISTSLYFVVFGSAIGSRISDVNGIGYGSFIVPGLVMLSLLSQSISNASFGI
YFPRFTGTIYEVLSAPVSHWEIVTAYVGAAASKSILLGLIILATAALFVPLHILHPFWMVLFLVLTSVTFSLFGFVIGIW
ADSFEKLQLVPLLIITPLTFLGGSFYSVDMLPPAWRVITLFNPIVYLVSGFRWSFYGLADVHVGISLAATSLFLVILLAI
VAWMFRTGYKLKN

Sequences:

>Translated_253_residues
MNFHAIRAIYRAEMARTRRTLMQSIIAPVISTSLYFVVFGSAIGSRISDVNGIGYGSFIVPGLVMLSLLSQSISNASFGI
YFPRFTGTIYEVLSAPVSHWEIVTAYVGAAASKSILLGLIILATAALFVPLHILHPFWMVLFLVLTSVTFSLFGFVIGIW
ADSFEKLQLVPLLIITPLTFLGGSFYSVDMLPPAWRVITLFNPIVYLVSGFRWSFYGLADVHVGISLAATSLFLVILLAI
VAWMFRTGYKLKN
>Mature_253_residues
MNFHAIRAIYRAEMARTRRTLMQSIIAPVISTSLYFVVFGSAIGSRISDVNGIGYGSFIVPGLVMLSLLSQSISNASFGI
YFPRFTGTIYEVLSAPVSHWEIVTAYVGAAASKSILLGLIILATAALFVPLHILHPFWMVLFLVLTSVTFSLFGFVIGIW
ADSFEKLQLVPLLIITPLTFLGGSFYSVDMLPPAWRVITLFNPIVYLVSGFRWSFYGLADVHVGISLAATSLFLVILLAI
VAWMFRTGYKLKN

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=249, Percent_Identity=38.1526104417671, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27889; Mature: 27889

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFHAIRAIYRAEMARTRRTLMQSIIAPVISTSLYFVVFGSAIGSRISDVNGIGYGSFIV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
PGLVMLSLLSQSISNASFGIYFPRFTGTIYEVLSAPVSHWEIVTAYVGAAASKSILLGLI
HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ILATAALFVPLHILHPFWMVLFLVLTSVTFSLFGFVIGIWADSFEKLQLVPLLIITPLTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LGGSFYSVDMLPPAWRVITLFNPIVYLVSGFRWSFYGLADVHVGISLAATSLFLVILLAI
HCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAWMFRTGYKLKN
HHHHHHCCCCCCC
>Mature Secondary Structure
MNFHAIRAIYRAEMARTRRTLMQSIIAPVISTSLYFVVFGSAIGSRISDVNGIGYGSFIV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
PGLVMLSLLSQSISNASFGIYFPRFTGTIYEVLSAPVSHWEIVTAYVGAAASKSILLGLI
HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ILATAALFVPLHILHPFWMVLFLVLTSVTFSLFGFVIGIWADSFEKLQLVPLLIITPLTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LGGSFYSVDMLPPAWRVITLFNPIVYLVSGFRWSFYGLADVHVGISLAATSLFLVILLAI
HCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAWMFRTGYKLKN
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]