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The map label for this gene is ompU

Identifier: 189353700

GI number: 189353700

Start: 1962851

End: 1963990

Strand: Reverse

Name: ompU

Synonym: BMULJ_04945

Alternate gene names: NA

Gene position: 1963990-1962851 (Counterclockwise)

Preceding gene: 189353701

Following gene: 189353699

Centisome position: 79.41

GC content: 63.42

Gene sequence:

>1140_bases
ATGAAGCAATCGAAAGTTGCCGTGGCAGTCGCGCTTGCATGCGCGGCATGTGTTCCCGCGATCGGTCATGCACAAAGCAG
CGTGACGCTGTACGGGATCATCGACGCAGGCGTCACGTATGTGAACAACACCGGTGGCTCGCACGTGTTCAAGTTCGACG
ACGGCGTCGCATATGGAAACCGCTTCGGCCTGAAGGGCACCGAGGATCTGGGCGGCGGCCTGAAGGCCGTGTTCGCGCTC
GAAAGCGGCTTCCATCTCGGCAACGGGCAGCTCGGCTTCGGCGGCGCCGAATTCGGCCGCCAGGCGTACGTCGGCCTGCA
GAACAACTGGGGTACGCTCTCGTTCGGCAATCAGCTCGACATCACCAACGAGCTCGTGTCGATCTACAACATCTCCGCGT
GGGGCAGCGGCTACGCGATCCACCAGGGCGACTTCGACCGCTTCAACGGCGATCGCCTGCCCAACTCCGTCAAGTTCCTG
TCGAACGACCTGAGCGGCTTCAAGTTCGGCGCGATGTATTCGTTCGGCAACGTCGCCGGCAACTTCCACCGCAACAGCGC
ATGGAGCGCGGGCGCCAGCTTCACGAAGGGCGACTTCTCGATCGGCGCCGCGTACACGCGCCTGAACAACCCGAACGGCA
TCTATGCGTTCGATCCGTACGCGATGATCGGCACGCACACGTTCCTCGGCCAGCAGACGGTGACCGTCGATCCGGCGACC
GGCCAGCGAACCGACCTGTTCGCGAACACGGCGATGAACGTCGACAGCCAGGGCACGTTCGGCGTCGGCGCGAGCTACAC
GATCGGCAAGCTGACGCTCGATGCGAACTACTCGTACACGACGATCAAGGGCTTCGGCCAGTCGTCGCACATGCAGGTGT
ACGAAGGCGGCGGCCTGTATCAGTTCACGCCGGCACTGAGCTTCATCGCCGGCTATCAGCACACGCGCTTCGAAGGCCAC
CACTGGAACCAGGGCACGGCCGGCCTGCATTACCTGCTGTCGAAGCGCACCGACGTCTACATCTCGGGCGACTACCTGCG
CGCATCGCAGGGTGTCGATGCGGTGATCGGCTACAGCTTCACGCCGTCCACGACGCAGACGCAGGCCGACGTGCGGATCG
GGATGCGGCATTCGTTCTGA

Upstream 100 bases:

>100_bases
TCCGATTTACCGAATTACATATCAACCCTGAGCCGGCGTATCGCGGCGCGCGCCGGACAGCGGTTATTTCCATCGAACGG
GTCAGGGAGGGTGGTCGACA

Downstream 100 bases:

>100_bases
CCGGCGCACCGGCTCGTTCGACGTCTTCAGCGAGGTCTCTCTTTCGCGCGAACTGCGGTTCGCGCTTTTTTTTTGTGCGC
GGCACGGCGCGCAGGGCGGC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKQSKVAVAVALACAACVPAIGHAQSSVTLYGIIDAGVTYVNNTGGSHVFKFDDGVAYGNRFGLKGTEDLGGGLKAVFAL
ESGFHLGNGQLGFGGAEFGRQAYVGLQNNWGTLSFGNQLDITNELVSIYNISAWGSGYAIHQGDFDRFNGDRLPNSVKFL
SNDLSGFKFGAMYSFGNVAGNFHRNSAWSAGASFTKGDFSIGAAYTRLNNPNGIYAFDPYAMIGTHTFLGQQTVTVDPAT
GQRTDLFANTAMNVDSQGTFGVGASYTIGKLTLDANYSYTTIKGFGQSSHMQVYEGGGLYQFTPALSFIAGYQHTRFEGH
HWNQGTAGLHYLLSKRTDVYISGDYLRASQGVDAVIGYSFTPSTTQTQADVRIGMRHSF

Sequences:

>Translated_379_residues
MKQSKVAVAVALACAACVPAIGHAQSSVTLYGIIDAGVTYVNNTGGSHVFKFDDGVAYGNRFGLKGTEDLGGGLKAVFAL
ESGFHLGNGQLGFGGAEFGRQAYVGLQNNWGTLSFGNQLDITNELVSIYNISAWGSGYAIHQGDFDRFNGDRLPNSVKFL
SNDLSGFKFGAMYSFGNVAGNFHRNSAWSAGASFTKGDFSIGAAYTRLNNPNGIYAFDPYAMIGTHTFLGQQTVTVDPAT
GQRTDLFANTAMNVDSQGTFGVGASYTIGKLTLDANYSYTTIKGFGQSSHMQVYEGGGLYQFTPALSFIAGYQHTRFEGH
HWNQGTAGLHYLLSKRTDVYISGDYLRASQGVDAVIGYSFTPSTTQTQADVRIGMRHSF
>Mature_379_residues
MKQSKVAVAVALACAACVPAIGHAQSSVTLYGIIDAGVTYVNNTGGSHVFKFDDGVAYGNRFGLKGTEDLGGGLKAVFAL
ESGFHLGNGQLGFGGAEFGRQAYVGLQNNWGTLSFGNQLDITNELVSIYNISAWGSGYAIHQGDFDRFNGDRLPNSVKFL
SNDLSGFKFGAMYSFGNVAGNFHRNSAWSAGASFTKGDFSIGAAYTRLNNPNGIYAFDPYAMIGTHTFLGQQTVTVDPAT
GQRTDLFANTAMNVDSQGTFGVGASYTIGKLTLDANYSYTTIKGFGQSSHMQVYEGGGLYQFTPALSFIAGYQHTRFEGH
HWNQGTAGLHYLLSKRTDVYISGDYLRASQGVDAVIGYSFTPSTTQTQADVRIGMRHSF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40538; Mature: 40538

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSKVAVAVALACAACVPAIGHAQSSVTLYGIIDAGVTYVNNTGGSHVFKFDDGVAYGN
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEECCCCCEEEEECCCEEECC
RFGLKGTEDLGGGLKAVFALESGFHLGNGQLGFGGAEFGRQAYVGLQNNWGTLSFGNQLD
CCCCCCCHHHCCCEEEEEEEECCEEECCCCCCCCHHHCCCEEEEEECCCCCEEECCCCCC
ITNELVSIYNISAWGSGYAIHQGDFDRFNGDRLPNSVKFLSNDLSGFKFGAMYSFGNVAG
HHHHEEEEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCC
NFHRNSAWSAGASFTKGDFSIGAAYTRLNNPNGIYAFDPYAMIGTHTFLGQQTVTVDPAT
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCEEECEEECCCEEEEECCCC
GQRTDLFANTAMNVDSQGTFGVGASYTIGKLTLDANYSYTTIKGFGQSSHMQVYEGGGLY
CCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEEEECCCEE
QFTPALSFIAGYQHTRFEGHHWNQGTAGLHYLLSKRTDVYISGDYLRASQGVDAVIGYSF
EEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCEEECCCCCCEEEEEEE
TPSTTQTQADVRIGMRHSF
CCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKQSKVAVAVALACAACVPAIGHAQSSVTLYGIIDAGVTYVNNTGGSHVFKFDDGVAYGN
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEECCCCCEEEEECCCEEECC
RFGLKGTEDLGGGLKAVFALESGFHLGNGQLGFGGAEFGRQAYVGLQNNWGTLSFGNQLD
CCCCCCCHHHCCCEEEEEEEECCEEECCCCCCCCHHHCCCEEEEEECCCCCEEECCCCCC
ITNELVSIYNISAWGSGYAIHQGDFDRFNGDRLPNSVKFLSNDLSGFKFGAMYSFGNVAG
HHHHEEEEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCC
NFHRNSAWSAGASFTKGDFSIGAAYTRLNNPNGIYAFDPYAMIGTHTFLGQQTVTVDPAT
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCEEECEEECCCEEEEECCCC
GQRTDLFANTAMNVDSQGTFGVGASYTIGKLTLDANYSYTTIKGFGQSSHMQVYEGGGLY
CCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEEEECCCEE
QFTPALSFIAGYQHTRFEGHHWNQGTAGLHYLLSKRTDVYISGDYLRASQGVDAVIGYSF
EEHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCEEECCCCCCEEEEEEE
TPSTTQTQADVRIGMRHSF
CCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]