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The map label for this gene is cycA [H]

Identifier: 189353688

GI number: 189353688

Start: 1950996

End: 1951496

Strand: Reverse

Name: cycA [H]

Synonym: BMULJ_04933

Alternate gene names: 189353688

Gene position: 1951496-1950996 (Counterclockwise)

Preceding gene: 189353689

Following gene: 189353687

Centisome position: 78.91

GC content: 68.66

Gene sequence:

>501_bases
ATGAAGGCGATCGATGCAATCAAGTGGGGGGCCGCATGCATGGCGGCGGCCGCCGCATTCGCGTGGCCCGGTGCGGCCGG
CGCGCAGCAGACAGTGCACTACCCGGCGGGCAAGAGCCTGTTCGATGCGCAATGCGCGGTGTGTCATCAGGCGGGCGGCA
AGGGGCAGGACGGACTCGCACCGCCGCTGACCGACTATCCGGGCAAGTACGCGACGGTCGAGCAGGGCCGCGCGCAGCTC
GTCGCGACGCTGCTGCACGGCATGTTCGGCGAGATCGCGGTGCGCGACAAGCACTACAACTTCAAGATGCCGTCGTTTGC
GAGTGCGAGCGATGACGATATCGCGCACGTGCTGAACTACATCGTGTTCGATCTCGGCGCGCAGCACGGCGATGCGAAGC
CGTTCACCGCCGCCGAGATTCGCGCGGGCCGCGCGAAGGAGATGGACGGCGCGGCCGTGCACGCCCAGCGCGCGGCGGTG
ACGAAGGGCCTCGGGCTGTGA

Upstream 100 bases:

>100_bases
TCTACAAGCTGTCGCTGAACAACGACATCAACTGGTGCATGGCGAACGGCAACGCGAACTATCACTGTTCGGTTTCGGTC
CTGTTGGGAGCGGCAAAGCA

Downstream 100 bases:

>100_bases
CTGCCGCGCGTGCACGGGGCCGCCGCAGCGCGGCACGTCGCATCGGCACGCGCGTCGCCGCGCGGTGGCTGTCTGCCGCT
GCCGCCGCGTGTGCGATGGC

Product: class I cytochrome c

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKAIDAIKWGAACMAAAAAFAWPGAAGAQQTVHYPAGKSLFDAQCAVCHQAGGKGQDGLAPPLTDYPGKYATVEQGRAQL
VATLLHGMFGEIAVRDKHYNFKMPSFASASDDDIAHVLNYIVFDLGAQHGDAKPFTAAEIRAGRAKEMDGAAVHAQRAAV
TKGLGL

Sequences:

>Translated_166_residues
MKAIDAIKWGAACMAAAAAFAWPGAAGAQQTVHYPAGKSLFDAQCAVCHQAGGKGQDGLAPPLTDYPGKYATVEQGRAQL
VATLLHGMFGEIAVRDKHYNFKMPSFASASDDDIAHVLNYIVFDLGAQHGDAKPFTAAEIRAGRAKEMDGAAVHAQRAAV
TKGLGL
>Mature_166_residues
MKAIDAIKWGAACMAAAAAFAWPGAAGAQQTVHYPAGKSLFDAQCAVCHQAGGKGQDGLAPPLTDYPGKYATVEQGRAQL
VATLLHGMFGEIAVRDKHYNFKMPSFASASDDDIAHVLNYIVFDLGAQHGDAKPFTAAEIRAGRAKEMDGAAVHAQRAAV
TKGLGL

Specific function: This monoheme basic protein appears to function as an electron donor to cytochrome oxidase in T.thermophilus [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 17312; Mature: 17312

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIDAIKWGAACMAAAAAFAWPGAAGAQQTVHYPAGKSLFDAQCAVCHQAGGKGQDGLA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
PPLTDYPGKYATVEQGRAQLVATLLHGMFGEIAVRDKHYNFKMPSFASASDDDIAHVLNY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHH
IVFDLGAQHGDAKPFTAAEIRAGRAKEMDGAAVHAQRAAVTKGLGL
HHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKAIDAIKWGAACMAAAAAFAWPGAAGAQQTVHYPAGKSLFDAQCAVCHQAGGKGQDGLA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCC
PPLTDYPGKYATVEQGRAQLVATLLHGMFGEIAVRDKHYNFKMPSFASASDDDIAHVLNY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHH
IVFDLGAQHGDAKPFTAAEIRAGRAKEMDGAAVHAQRAAVTKGLGL
HHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2986626; 11152119 [H]