Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 189353620

GI number: 189353620

Start: 1879792

End: 1880565

Strand: Direct

Name: ybbK [C]

Synonym: BMULJ_04864

Alternate gene names: 189353620

Gene position: 1879792-1880565 (Clockwise)

Preceding gene: 189353619

Following gene: 189353621

Centisome position: 76.01

GC content: 64.21

Gene sequence:

>774_bases
ATGATCGGTTATACGTTCGGCTTCGGCAGCGTTTTGATCGTGTTCGTCGCAGTGCTGATCGCGTCGTCGATCCGCATCTT
CCGCGAGTACGAACGCGGCGTCGTGTTCATGCTCGGCCGGTTCTGGAAGGTCAAGGGACCGGGGCTCGTGCTGATCATTC
CGATCGTCCAGCAGGTCGTGCGGATCGATCTGCGCACAGTCGTGTTCGACGTGCCGGCGCAGGACGTGATCACGCGCGAC
AACGTGTCGGTGAAGGTGAACGCGGTCGTGTATTTCCGCGTCGTCGATCCGGAAAAGGCCGTGATCCAGGTCGCGCGCTT
TTTCGAGGCGACGAGCCAGCTCGCGCAGACGACGCTGCGCGCGGTGCTCGGCAAGCACGAACTCGACGCGCTGCTGGCGG
AGCGCGAACAGCTGAACGCCGACATCCAGAAGACGCTCGACGCGCAGACCGATGCGTGGGGCATCAAGGTATCGACGGTC
GAGATCAAGCACGTCGACCTGAACGAGACGATGGTGCGCGCGATCGCGCGGCAGGCCGAGGCCGAGCGCGAACGGCGCGC
GAAGGTGATTCATGCGGAAGGCGAACTGCAGGCGTCGGAGAAGCTGCTGCAGGCCGCGCAACGGCTCGCGCAGCAGCCGC
AGGCGATGCAGCTGCGCTATCTGCAGACGCTGACGACGATCGCGGCAGACAAGAATTCGACGATCGTGTTTCCGCTGCCG
GTCGATCTGCTGGGGGTGTTGCTCGAGCGGTGGGGAGGGAGGCGGGAGGAGTAA

Upstream 100 bases:

>100_bases
TGACCGGACGGCAGGGGCTCACGCTCACCGTCGCGCCGCTGTACGACGCGGTGCCCGCGCCGCGCGCGCCGCTTGCATCG
CCACCACAGGGAGACGCTCG

Downstream 100 bases:

>100_bases
CGCGGGTTCGGAGCGTGACCGTAAGTATTGGCCAACGCGGGCGGCCGTGCCGCATCGGCCGAACGGTATGAAAGGTACCG
CTGGCAGCGAGTTGGACGTA

Product: putative membrane protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MIGYTFGFGSVLIVFVAVLIASSIRIFREYERGVVFMLGRFWKVKGPGLVLIIPIVQQVVRIDLRTVVFDVPAQDVITRD
NVSVKVNAVVYFRVVDPEKAVIQVARFFEATSQLAQTTLRAVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTV
EIKHVDLNETMVRAIARQAEAERERRAKVIHAEGELQASEKLLQAAQRLAQQPQAMQLRYLQTLTTIAADKNSTIVFPLP
VDLLGVLLERWGGRREE

Sequences:

>Translated_257_residues
MIGYTFGFGSVLIVFVAVLIASSIRIFREYERGVVFMLGRFWKVKGPGLVLIIPIVQQVVRIDLRTVVFDVPAQDVITRD
NVSVKVNAVVYFRVVDPEKAVIQVARFFEATSQLAQTTLRAVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTV
EIKHVDLNETMVRAIARQAEAERERRAKVIHAEGELQASEKLLQAAQRLAQQPQAMQLRYLQTLTTIAADKNSTIVFPLP
VDLLGVLLERWGGRREE
>Mature_257_residues
MIGYTFGFGSVLIVFVAVLIASSIRIFREYERGVVFMLGRFWKVKGPGLVLIIPIVQQVVRIDLRTVVFDVPAQDVITRD
NVSVKVNAVVYFRVVDPEKAVIQVARFFEATSQLAQTTLRAVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTV
EIKHVDLNETMVRAIARQAEAERERRAKVIHAEGELQASEKLLQAAQRLAQQPQAMQLRYLQTLTTIAADKNSTIVFPLP
VDLLGVLLERWGGRREE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=241, Percent_Identity=50.6224066390041, Blast_Score=216, Evalue=1e-56,
Organism=Homo sapiens, GI221316744, Length=245, Percent_Identity=48.9795918367347, Blast_Score=210, Evalue=9e-55,
Organism=Homo sapiens, GI21686995, Length=245, Percent_Identity=48.9795918367347, Blast_Score=210, Evalue=1e-54,
Organism=Homo sapiens, GI7657615, Length=227, Percent_Identity=36.5638766519824, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI7305503, Length=162, Percent_Identity=39.5061728395062, Blast_Score=125, Evalue=4e-29,
Organism=Homo sapiens, GI20149563, Length=157, Percent_Identity=33.1210191082803, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI38016907, Length=57, Percent_Identity=66.6666666666667, Blast_Score=81, Evalue=9e-16,
Organism=Escherichia coli, GI1786697, Length=192, Percent_Identity=33.8541666666667, Blast_Score=127, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI17569493, Length=239, Percent_Identity=47.2803347280335, Blast_Score=216, Evalue=9e-57,
Organism=Caenorhabditis elegans, GI193209764, Length=239, Percent_Identity=47.2803347280335, Blast_Score=215, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI25153583, Length=261, Percent_Identity=45.2107279693487, Blast_Score=207, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI71987612, Length=254, Percent_Identity=45.6692913385827, Blast_Score=205, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI71987621, Length=254, Percent_Identity=45.6692913385827, Blast_Score=204, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI17569497, Length=237, Percent_Identity=43.4599156118143, Blast_Score=201, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI17569499, Length=253, Percent_Identity=42.6877470355731, Blast_Score=188, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17570161, Length=257, Percent_Identity=43.1906614785992, Blast_Score=188, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=257, Percent_Identity=43.1906614785992, Blast_Score=188, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17570459, Length=245, Percent_Identity=42.0408163265306, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=231, Percent_Identity=44.5887445887446, Blast_Score=181, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=223, Percent_Identity=46.1883408071749, Blast_Score=174, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=45, Blast_Score=138, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI32564147, Length=177, Percent_Identity=35.5932203389831, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=44.0677966101695, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17542664, Length=145, Percent_Identity=28.2758620689655, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI45556022, Length=241, Percent_Identity=49.792531120332, Blast_Score=216, Evalue=1e-56,
Organism=Drosophila melanogaster, GI18860517, Length=246, Percent_Identity=47.9674796747967, Blast_Score=207, Evalue=7e-54,
Organism=Drosophila melanogaster, GI62484448, Length=229, Percent_Identity=49.7816593886463, Blast_Score=201, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24657857, Length=229, Percent_Identity=49.7816593886463, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI62484274, Length=229, Percent_Identity=49.7816593886463, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI281365664, Length=229, Percent_Identity=49.7816593886463, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI28573263, Length=247, Percent_Identity=39.6761133603239, Blast_Score=181, Evalue=4e-46,
Organism=Drosophila melanogaster, GI281361631, Length=235, Percent_Identity=38.2978723404255, Blast_Score=180, Evalue=7e-46,
Organism=Drosophila melanogaster, GI281361633, Length=235, Percent_Identity=38.2978723404255, Blast_Score=180, Evalue=8e-46,
Organism=Drosophila melanogaster, GI21356845, Length=239, Percent_Identity=34.7280334728033, Blast_Score=177, Evalue=8e-45,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=39.7790055248619, Blast_Score=142, Evalue=1e-34,
Organism=Drosophila melanogaster, GI45550506, Length=162, Percent_Identity=38.2716049382716, Blast_Score=124, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28873; Mature: 28873

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGYTFGFGSVLIVFVAVLIASSIRIFREYERGVVFMLGRFWKVKGPGLVLIIPIVQQVV
CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHEEECCCCEEEEHHHHHHHH
RIDLRTVVFDVPAQDVITRDNVSVKVNAVVYFRVVDPEKAVIQVARFFEATSQLAQTTLR
HHHHHHHEEECCHHHHEECCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
AVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTVEIKHVDLNETMVRAIARQAE
HHHCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHH
AERERRAKVIHAEGELQASEKLLQAAQRLAQQPQAMQLRYLQTLTTIAADKNSTIVFPLP
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECC
VDLLGVLLERWGGRREE
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIGYTFGFGSVLIVFVAVLIASSIRIFREYERGVVFMLGRFWKVKGPGLVLIIPIVQQVV
CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHEEECCCCEEEEHHHHHHHH
RIDLRTVVFDVPAQDVITRDNVSVKVNAVVYFRVVDPEKAVIQVARFFEATSQLAQTTLR
HHHHHHHEEECCHHHHEECCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
AVLGKHELDALLAEREQLNADIQKTLDAQTDAWGIKVSTVEIKHVDLNETMVRAIARQAE
HHHCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHH
AERERRAKVIHAEGELQASEKLLQAAQRLAQQPQAMQLRYLQTLTTIAADKNSTIVFPLP
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECC
VDLLGVLLERWGGRREE
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]