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The map label for this gene is ydcN [C]

Identifier: 189353554

GI number: 189353554

Start: 1792431

End: 1792988

Strand: Reverse

Name: ydcN [C]

Synonym: BMULJ_04798

Alternate gene names: 189353554

Gene position: 1792988-1792431 (Counterclockwise)

Preceding gene: 189353555

Following gene: 189353553

Centisome position: 72.5

GC content: 66.67

Gene sequence:

>558_bases
ATGAACGAACAGGAAGAGATAGAAAGCCTTGCGATCCTGATCCGCGATCTGCGCAAGCATCGGAAGGTCACGCTGAGCGA
ACTCGCGGAACGGATCGGCCGCTCGGTCGGCTTTCTGTCGCAGGTCGAGCGCGGGCTGTCGCGGCCGACCGTCGCCGATC
TCACGGCGATCGGCGAGGCGCTCGGCGTGCCGACCACGTATTTCTACAGCCTCAGCAAGCCGCGCAGCATCCCGTGGGTC
ACGCGGCCGGACGAGCGGCGCACGGTCTATTACGCGGACGGCATCACCGACGTCCTCGTGTCGCCGACCATGCGCGCGCG
CTTCTCGATTCTCGAGAGTCATCTTGCGCCCGGTGCGAGCAGCGGCGAGCGCCCCGTCGACGACAGCGACGAGCAGGGCG
GCTTCGTGCTCGAAGGCGAACTGACGATCTGGGTCGACGGCGACGACACGCCGGTCACGCTCGGCCCGAACGACGCGTTT
CAACTGCCGGCGCACAAGCGCTTCCGCTACGCGAACCTGACGGACCGCCCGACGCGCGTGATCTGGGTCTTCACCTAA

Upstream 100 bases:

>100_bases
GGCGCTTTCCCGGCGGCGACCGGCTCGCCGCGCCGCTGGAGGCGATCGGCAAGGCTTGGTACCGTCTGCGCGACACCGTC
TGACCGCATCGGAATTCATC

Downstream 100 bases:

>100_bases
GCCGTTACGCGGTGCCGCATCGTGCACGAATCCGGCCGACGCGCTGCGCGGCCGTCATACCGAACGAGGATGAGAGATGG
CAGACGTGGTCCCCGCACTG

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cupin 2 Conserved Barrel Domain Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator MerR Family; Cupin Domain Protein; Cupin 2 Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator XRE Family Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Xre Familiy; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNEQEEIESLAILIRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSKPRSIPWV
TRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDDSDEQGGFVLEGELTIWVDGDDTPVTLGPNDAF
QLPAHKRFRYANLTDRPTRVIWVFT

Sequences:

>Translated_185_residues
MNEQEEIESLAILIRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSKPRSIPWV
TRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDDSDEQGGFVLEGELTIWVDGDDTPVTLGPNDAF
QLPAHKRFRYANLTDRPTRVIWVFT
>Mature_185_residues
MNEQEEIESLAILIRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSKPRSIPWV
TRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGASSGERPVDDSDEQGGFVLEGELTIWVDGDDTPVTLGPNDAF
QLPAHKRFRYANLTDRPTRVIWVFT

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20731; Mature: 20731

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEQEEIESLAILIRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEA
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LGVPTTYFYSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGAS
HCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCC
SGERPVDDSDEQGGFVLEGELTIWVDGDDTPVTLGPNDAFQLPAHKRFRYANLTDRPTRV
CCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEECCCCCEECCCCCCEEECCCCCCCCEE
IWVFT
EEEEC
>Mature Secondary Structure
MNEQEEIESLAILIRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEA
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LGVPTTYFYSLSKPRSIPWVTRPDERRTVYYADGITDVLVSPTMRARFSILESHLAPGAS
HCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCC
SGERPVDDSDEQGGFVLEGELTIWVDGDDTPVTLGPNDAFQLPAHKRFRYANLTDRPTRV
CCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEECCCCCEECCCCCCEEECCCCCCCCEE
IWVFT
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA