Click here to switch to the map view.

The map label for this gene is ybfI [H]

Identifier: 189353472

GI number: 189353472

Start: 1691223

End: 1692017

Strand: Direct

Name: ybfI [H]

Synonym: BMULJ_04716

Alternate gene names: 189353472

Gene position: 1691223-1692017 (Clockwise)

Preceding gene: 189353468

Following gene: 189353473

Centisome position: 68.38

GC content: 70.94

Gene sequence:

>795_bases
ATGCATCGTGTCACCCATTACCGGCGAAGCGACGACGGAATCGAAGCGATCAGCCTCGACTCCGATCGCACGTTCCCGCG
CCACGCGCACGACGAGTTCGGCGTCGGCGTGATCGTCAGCGGTGCGCACCGGTCGTGGAGCGGCCGCGGGCAAGTCGACG
CGCTCGCCGGCGACGCAATCATGGTGAATCCGGGCGAGATGCACGACGGCATGCCGATCGGCACGCGCGCGGCACGGCGC
TGGCGAATGCTGTACCTCGCGCCGTCGCTGGTTGCCGGCATCGCGGCGGAAGAAGGGCTCGGCGGCATCGAACTCGCGCA
TCCGGCGGTGCGCGATGCGCGGCTCGCAGCGGCGGTCGTGCAGCTGCATGCACATATCGTCGAATCCGCCGATGCGCCGC
TGGCTCGCGACGAAGCGCTCGTGACGGTCGTCGCACATCTGCTGGCGCGTCATGCGAATCGCACGCTGCCGAGCGCCGGC
GTCGCGCCGGCCGTGCGCGCGGCGCGCGAGCGGCTCGATGCGGCGCCTGCCGAACCCGTGTCGCTTGCCGAATTGGCGAC
GCTCAGCGGTGTCAGCCGCTTTCAGCTGCTGCGCGGTTTCGCGCGCGAACTCGGCATTACGCCGCATGCCTATCTGCTTC
AGTCGCGCACGCGGCTCGCCCGTGCGCTGCTCGCGAGCGGCCGCCCGATCGCGGAGGCGGCGGCCGAGGCCGGCTTTGCG
GACCAGAGCCATCTGACGCGCGCATTCGGGCGACAGTTCGGCATCACGCCGGGGCGGTTCGCGCAGGCGGTGTGA

Upstream 100 bases:

>100_bases
TGCGCGCCGCGCGGTATCGGCCAAACGGATGAAGCGCGCGCGACGCCGGAACGCGCTAAAGTGCGGGACATCTGCGCCGC
GGCCGGCGCGAGGAGCGCCC

Downstream 100 bases:

>100_bases
TCGGCGGTACGCCGTCGTCATGCAGGATGTCTGCGGCGAAACAGGCCGCGACACGTTGACGATCGCGCGATCGACGGTCA
TTCGCTTTGCCGTCGACGTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MHRVTHYRRSDDGIEAISLDSDRTFPRHAHDEFGVGVIVSGAHRSWSGRGQVDALAGDAIMVNPGEMHDGMPIGTRAARR
WRMLYLAPSLVAGIAAEEGLGGIELAHPAVRDARLAAAVVQLHAHIVESADAPLARDEALVTVVAHLLARHANRTLPSAG
VAPAVRAARERLDAAPAEPVSLAELATLSGVSRFQLLRGFARELGITPHAYLLQSRTRLARALLASGRPIAEAAAEAGFA
DQSHLTRAFGRQFGITPGRFAQAV

Sequences:

>Translated_264_residues
MHRVTHYRRSDDGIEAISLDSDRTFPRHAHDEFGVGVIVSGAHRSWSGRGQVDALAGDAIMVNPGEMHDGMPIGTRAARR
WRMLYLAPSLVAGIAAEEGLGGIELAHPAVRDARLAAAVVQLHAHIVESADAPLARDEALVTVVAHLLARHANRTLPSAG
VAPAVRAARERLDAAPAEPVSLAELATLSGVSRFQLLRGFARELGITPHAYLLQSRTRLARALLASGRPIAEAAAEAGFA
DQSHLTRAFGRQFGITPGRFAQAV
>Mature_264_residues
MHRVTHYRRSDDGIEAISLDSDRTFPRHAHDEFGVGVIVSGAHRSWSGRGQVDALAGDAIMVNPGEMHDGMPIGTRAARR
WRMLYLAPSLVAGIAAEEGLGGIELAHPAVRDARLAAAVVQLHAHIVESADAPLARDEALVTVVAHLLARHANRTLPSAG
VAPAVRAARERLDAAPAEPVSLAELATLSGVSRFQLLRGFARELGITPHAYLLQSRTRLARALLASGRPIAEAAAEAGFA
DQSHLTRAFGRQFGITPGRFAQAV

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28084; Mature: 28084

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRVTHYRRSDDGIEAISLDSDRTFPRHAHDEFGVGVIVSGAHRSWSGRGQVDALAGDAI
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCEE
MVNPGEMHDGMPIGTRAARRWRMLYLAPSLVAGIAAEEGLGGIELAHPAVRDARLAAAVV
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
QLHAHIVESADAPLARDEALVTVVAHLLARHANRTLPSAGVAPAVRAARERLDAAPAEPV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCH
SLAELATLSGVSRFQLLRGFARELGITPHAYLLQSRTRLARALLASGRPIAEAAAEAGFA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
DQSHLTRAFGRQFGITPGRFAQAV
CHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MHRVTHYRRSDDGIEAISLDSDRTFPRHAHDEFGVGVIVSGAHRSWSGRGQVDALAGDAI
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCEE
MVNPGEMHDGMPIGTRAARRWRMLYLAPSLVAGIAAEEGLGGIELAHPAVRDARLAAAVV
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
QLHAHIVESADAPLARDEALVTVVAHLLARHANRTLPSAGVAPAVRAARERLDAAPAEPV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCH
SLAELATLSGVSRFQLLRGFARELGITPHAYLLQSRTRLARALLASGRPIAEAAAEAGFA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
DQSHLTRAFGRQFGITPGRFAQAV
CHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]