Click here to switch to the map view.

The map label for this gene is cfxR [H]

Identifier: 189353459

GI number: 189353459

Start: 1677920

End: 1679005

Strand: Direct

Name: cfxR [H]

Synonym: BMULJ_04703

Alternate gene names: 189353459

Gene position: 1677920-1679005 (Clockwise)

Preceding gene: 189353458

Following gene: 189353460

Centisome position: 67.85

GC content: 69.34

Gene sequence:

>1086_bases
ATGAACATCCGGTTTCTTGAAACCTTCGTCTGGCTCGCGAAGCTCGAAAATTTCCGCCTGACCGCCGAAAAGCTGCATAC
GACGCAGGCGGCCGTGTCGAGCCGCATCGCGTCGCTCGAAGAAGCGTTCGACGTGCGCCTGTTCGATCGCAACACGCGCT
CGGCCACGCTCACGCCTGCGGGACGCCGCATGCTCGCGTACGCGGAGCGGATCGTGCGGCTCGACCACGAGATGCGGCGC
GAGATCCCGTCGGCGAGCGACGTGGGCCCGATCCGCATCGGCGTGATCGAGTCGATCGTGCACAGCTGGTTCCCGGCGCT
GATCGCGCGGGCGCGCGAGCACTATCCGCGGCTCGACGTCGAAATCACGAGCGACACGACGCTGCACCTGACGCGGCTGC
TCAGCACCGACGGCGTCGACCTGATCCTGCAGACGGACACGGTGCCCGGCCCCGACTTCACGAACCTGCCGCTCTGCGAG
TTTCCGGTGCGCTGGGTCGCGAGCCCGCGCCTCGGGCTCGGCGGCGAACGGCTCGACGTCGCGCAGCTCGCCGAATTTCC
GGTGATCAGCTTCTCGCGCCATTCGGGGCCGCACGCGACGATCGAGCGGCTGTTCGCGGCCGTCGAACGACCGGCGAGCA
TCAACTGCATCACGTCGGTCGCCGCGATGATCCGGCTCGTCGCGGACGGCTTCGGCGTCGCCGCGTTGCCGCCCGCGATC
ATCGGACGCGAACTGCAGGAAGGCGCGCTCGAACTGCTCGACGTCGAACCGGCTTTTCCGGCGCTGCCGCTCGTCGCGAC
GTATCGGACGCAAGGGCTGCCGCTCGCCGCGCGCATCGCCGAACTCGCGAGCGAGGTTGCGCGCGCGACGCCGTCGATGC
CGATCGATACGGCCGCCGGCACGTCGATGCGACGCGGCGCTGAACGTCGCGCGCAGGCGCCCGACGTGCGCGCGAAAACC
GGGAAAGACGCCAAGGCGGCCAAAGGCGCGAAAGAAGCAAAAGATGCTGGCCGCCCCCAACGCGCGGCCGAACCGTCGAC
GATCGCCGCACCGGCCGCCGCGAAACGCCGGCCGCGCCGCTCATAA

Upstream 100 bases:

>100_bases
GCCGCACGGGCGGCCTACGCGTGCTGCATGCGGCGCAAATCGATTAACATCGGCCGGATTCCGCCGCCTCCGCGCGGCCC
CGCTCCCCGTCCGGCACTCG

Downstream 100 bases:

>100_bases
GAAAACCTGTTCACCGCGAATTTGTTTTCTTGTTGGACGCGCCCGGCGCGCGTTCGGGACACTGCAGGTTCCGACTCATC
CGTCACGAGGACCTCCGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MNIRFLETFVWLAKLENFRLTAEKLHTTQAAVSSRIASLEEAFDVRLFDRNTRSATLTPAGRRMLAYAERIVRLDHEMRR
EIPSASDVGPIRIGVIESIVHSWFPALIARAREHYPRLDVEITSDTTLHLTRLLSTDGVDLILQTDTVPGPDFTNLPLCE
FPVRWVASPRLGLGGERLDVAQLAEFPVISFSRHSGPHATIERLFAAVERPASINCITSVAAMIRLVADGFGVAALPPAI
IGRELQEGALELLDVEPAFPALPLVATYRTQGLPLAARIAELASEVARATPSMPIDTAAGTSMRRGAERRAQAPDVRAKT
GKDAKAAKGAKEAKDAGRPQRAAEPSTIAAPAAAKRRPRRS

Sequences:

>Translated_361_residues
MNIRFLETFVWLAKLENFRLTAEKLHTTQAAVSSRIASLEEAFDVRLFDRNTRSATLTPAGRRMLAYAERIVRLDHEMRR
EIPSASDVGPIRIGVIESIVHSWFPALIARAREHYPRLDVEITSDTTLHLTRLLSTDGVDLILQTDTVPGPDFTNLPLCE
FPVRWVASPRLGLGGERLDVAQLAEFPVISFSRHSGPHATIERLFAAVERPASINCITSVAAMIRLVADGFGVAALPPAI
IGRELQEGALELLDVEPAFPALPLVATYRTQGLPLAARIAELASEVARATPSMPIDTAAGTSMRRGAERRAQAPDVRAKT
GKDAKAAKGAKEAKDAGRPQRAAEPSTIAAPAAAKRRPRRS
>Mature_361_residues
MNIRFLETFVWLAKLENFRLTAEKLHTTQAAVSSRIASLEEAFDVRLFDRNTRSATLTPAGRRMLAYAERIVRLDHEMRR
EIPSASDVGPIRIGVIESIVHSWFPALIARAREHYPRLDVEITSDTTLHLTRLLSTDGVDLILQTDTVPGPDFTNLPLCE
FPVRWVASPRLGLGGERLDVAQLAEFPVISFSRHSGPHATIERLFAAVERPASINCITSVAAMIRLVADGFGVAALPPAI
IGRELQEGALELLDVEPAFPALPLVATYRTQGLPLAARIAELASEVARATPSMPIDTAAGTSMRRGAERRAQAPDVRAKT
GKDAKAAKGAKEAKDAGRPQRAAEPSTIAAPAAAKRRPRRS

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (cfxLS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=238, Percent_Identity=27.3109243697479, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=304, Percent_Identity=25.6578947368421, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788626, Length=168, Percent_Identity=27.9761904761905, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87082132, Length=256, Percent_Identity=23.828125, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=28.5123966942149, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI48994962, Length=167, Percent_Identity=28.7425149700599, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI157672245, Length=160, Percent_Identity=28.75, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788481, Length=258, Percent_Identity=25.968992248062, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=246, Percent_Identity=21.5447154471545, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=277, Percent_Identity=25.2707581227437, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790783, Length=259, Percent_Identity=27.7992277992278, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 39306; Mature: 39306

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRFLETFVWLAKLENFRLTAEKLHTTQAAVSSRIASLEEAFDVRLFDRNTRSATLTPA
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEECHH
GRRMLAYAERIVRLDHEMRREIPSASDVGPIRIGVIESIVHSWFPALIARAREHYPRLDV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
EITSDTTLHLTRLLSTDGVDLILQTDTVPGPDFTNLPLCEFPVRWVASPRLGLGGERLDV
EECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCCCH
AQLAEFPVISFSRHSGPHATIERLFAAVERPASINCITSVAAMIRLVADGFGVAALPPAI
HHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHH
IGRELQEGALELLDVEPAFPALPLVATYRTQGLPLAARIAELASEVARATPSMPIDTAAG
HHHHHHHHHHHEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
TSMRRGAERRAQAPDVRAKTGKDAKAAKGAKEAKDAGRPQRAAEPSTIAAPAAAKRRPRR
CHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCHHCCCHHHHCCCCC
S
C
>Mature Secondary Structure
MNIRFLETFVWLAKLENFRLTAEKLHTTQAAVSSRIASLEEAFDVRLFDRNTRSATLTPA
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEECHH
GRRMLAYAERIVRLDHEMRREIPSASDVGPIRIGVIESIVHSWFPALIARAREHYPRLDV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
EITSDTTLHLTRLLSTDGVDLILQTDTVPGPDFTNLPLCEFPVRWVASPRLGLGGERLDV
EECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCCCH
AQLAEFPVISFSRHSGPHATIERLFAAVERPASINCITSVAAMIRLVADGFGVAALPPAI
HHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHH
IGRELQEGALELLDVEPAFPALPLVATYRTQGLPLAARIAELASEVARATPSMPIDTAAG
HHHHHHHHHHHEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
TSMRRGAERRAQAPDVRAKTGKDAKAAKGAKEAKDAGRPQRAAEPSTIAAPAAAKRRPRR
CHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCHHCCCHHHHCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1779759 [H]