Click here to switch to the map view.

The map label for this gene is ymfO [C]

Identifier: 189353396

GI number: 189353396

Start: 1641675

End: 1642970

Strand: Reverse

Name: ymfO [C]

Synonym: BMULJ_04637

Alternate gene names: 189353396

Gene position: 1642970-1641675 (Counterclockwise)

Preceding gene: 189353397

Following gene: 189353395

Centisome position: 66.43

GC content: 60.8

Gene sequence:

>1296_bases
ATGGGTTTGTTCGATTTCATCCGGCGCGAAAAGCAGCCGGAGGCCCAAGCTCGTCCGCACGTCGAGCCGTCATTTCAGGC
CTCGACACCGACGACGTCCATTCCCGGTGAGACGTTCGAAGGCCTCGACGATCCGAGATTGAAGGAATACATCCGGCGCG
GCGAGCTGAATGGTGGCACGGGTCGCGAGACGCGAGCGCTGCGAAACATGGCGGTGCTGCGCTGCGTGACCCTGATCTCG
GGAACGATCGGCATGCTGCCGATGAACCTGATCAGTAGCGACGACAGCAAGCAGGTATTGACGGACGATCCTGCCCACCG
GCTGCTCAAGTACAAGCCGAACGATTGGCAGACGCCGATGGAGTTCAAGAGCTTGATGCAACTGCGCGCGCTGCTCGACG
GCGAGTCGATGGCGCGGATCGTGTGGAGCGGTAATCGGCCGATCAGACTGATTCCGATGGATCGAGGTTCGGCAAAAGGC
CGCCTCACGTCAACGTGGCAGATCGTCTACGACTACACGACGCCGACCGGGGACAAGATCGAGTTGCCGGCGCGCGAGGT
GTTTCACCTGCGTGACTTGTCGATTGATGGCGTCAGCGGGGTCTCGCGAGTCAAGCTGTCTGGAAATGCGCTGGAGCTAG
CGGAGCAAGCCGAGCGCGCCGCTTCACGGACGTTCCGAACTGGCGTGATGGCGGGCGGCGCCATCGAGGTTCCGAAGGAA
CTGTCGGATAACGCATACGGGCGCATGAAAGCGTCCGTGCAAGAGAACCATACCGGATCGGAGAACGCCGGTAGCTGGAT
GCTGTTGGAGGAAGGTGCGACAGCGAAGCAGTTCTCGAACACCGCAGCATCGGCGCAGCAGATCGAGAACCGAAATCACC
AGATCGAAGAGGTCGCGCGCATGTACGGTGTGCCGCGTCCCCTTCTGATGATGGACGACACGAGCTGGGGCAGCGGCATC
GAACAGCTCGCGATTTTCTTCATTCAGTACGGGCTTTCGCACTGGTTCGTTTCGTGGGAGCAAGCGGCGGCTCGTGCCTT
CCTGCCGGAAAAGATGCTGGGTCAGCGGCAATTCAAATTCAACGAGGGCGCGCTGTTGCGCGGCACGCTGAACGACCAAG
CCGCTTTCTTCTCGAAGGCGCTCGGTGCCGGCGGACAGTCTCCTTGGATGAAGCAAAACGAGGTCCGCGAGATGCTGGAT
TTGCCTCGCGCTGACGATCCGGTCGCCGATCAGCTCCGGAACCCGATGACACAGAAACAGAAGGGGAGTGGCGATGAGCC
TCCTGCAACTACCTGA

Upstream 100 bases:

>100_bases
ATGGCGCTGTTTAACGCAGTCTCGCTCATGGCGCTCAATCCGCCCGCGCAGGGCCAGTCGGTCTACGAGTCGCGGGGCAT
TCGTTTTCTCTGAGGTGTGA

Downstream 100 bases:

>100_bases
GATTCGCGCTGACCACCGGCTTGGCGCGGCTCAATTCGACGTGCGGCCGGATGCGTTGGAGCGTTGGAATCCCGATGTGC
GGGCGGCGAACGCCGACGAT

Product: bacteriophage portal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS
GTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDRGSAKG
RLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEVPKE
LSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTSWGSGI
EQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLD
LPRADDPVADQLRNPMTQKQKGSGDEPPATT

Sequences:

>Translated_431_residues
MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS
GTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDRGSAKG
RLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEVPKE
LSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTSWGSGI
EQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLD
LPRADDPVADQLRNPMTQKQKGSGDEPPATT
>Mature_430_residues
GLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLISG
TIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDRGSAKGR
LTSTWQIVYDYTTPTGDKIELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEVPKEL
SDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTSWGSGIE
QLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLDL
PRADDPVADQLRNPMTQKQKGSGDEPPATT

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 47949; Mature: 47818

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGT
CCHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCC
GRETRALRNMAVLRCVTLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHEECCCCCCCCH
EFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDRGSAKGRLTSTWQIVYDYTTPTGDKI
HHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCEE
ELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEVPKE
ECCHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVAR
HCCCCHHHEEHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
MYGVPRPLLMMDDTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKF
HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEC
NEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVADQLRNPMTQKQ
CCCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHH
KGSGDEPPATT
CCCCCCCCCCC
>Mature Secondary Structure 
GLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGT
CHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCC
GRETRALRNMAVLRCVTLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHEECCCCCCCCH
EFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDRGSAKGRLTSTWQIVYDYTTPTGDKI
HHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCEE
ELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEVPKE
ECCHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
LSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVAR
HCCCCHHHEEHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
MYGVPRPLLMMDDTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKF
HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEC
NEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVADQLRNPMTQKQ
CCCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHH
KGSGDEPPATT
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA