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The map label for this gene is rnk [H]

Identifier: 189353320

GI number: 189353320

Start: 1557448

End: 1557846

Strand: Direct

Name: rnk [H]

Synonym: BMULJ_04560

Alternate gene names: 189353320

Gene position: 1557448-1557846 (Clockwise)

Preceding gene: 189353318

Following gene: 189353321

Centisome position: 62.97

GC content: 61.15

Gene sequence:

>399_bases
ATGAAGCAACGCCTTTACCAGCTCACCGAACTCGATGTCGCGCGTCTCGAAAAGTACGCCGAACACAATCCGCGCTTTCA
GGCGATGCTCGACACGCTGCTCGAACGCGCCGACATCGTCCGATCGGACGCGATCAAGGCGAACGTCGTCACGATGAATT
CGCAGATCACGCTGCTCGACGAGGCGACCCAGGAGCCGGCCACCTGGACCATCGTGTATCCGGATGCCGCGAACCTCGAA
CTCGGCCGTCTGAACGTGTTCTCGCCGGTCGGGATGGCGCTATTGGGCACGCAACGCGGCCAGTCGGTGAAAGTGATGCA
GCCGAGCGGCACGGAAAAGCTGATGAAGGTCGCGGAAATCGTCTTCCAGCCGGAAGCGAACGGCGAATACACGCGCTGA

Upstream 100 bases:

>100_bases
TGATCTGACGCCCGCTCTCCCCCGGAGCCGGTCAGACAGGCTCCGGGCGATCCCCTGAAGGCACGTCCCGCCTGCCCTGC
CGATCATTTGGAGAACCGTC

Downstream 100 bases:

>100_bases
CGCCGCGCGGTGACGCGACGGCGGCGCGCCGCGGGCCGAAAATGAAAAAGCGAGGCATTGAACTGCACCCCAAAAGTTGG
ATACCGATCCAACCTTTGGG

Product: regulator of nucleoside diphosphate kinase

Products: NA

Alternate protein names: Transcript cleavage factor greA [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKQRLYQLTELDVARLEKYAEHNPRFQAMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLE
LGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVFQPEANGEYTR

Sequences:

>Translated_132_residues
MKQRLYQLTELDVARLEKYAEHNPRFQAMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLE
LGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVFQPEANGEYTR
>Mature_132_residues
MKQRLYQLTELDVARLEKYAEHNPRFQAMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLE
LGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVFQPEANGEYTR

Specific function: Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the greA/greB family [H]

Homologues:

Organism=Escherichia coli, GI1786827, Length=128, Percent_Identity=32.03125, Blast_Score=66, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018151
- InterPro:   IPR006359
- InterPro:   IPR001437
- InterPro:   IPR022691 [H]

Pfam domain/function: PF01272 GreA_GreB; PF03449 GreA_GreB_N [H]

EC number: NA

Molecular weight: Translated: 14839; Mature: 14839

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRLYQLTELDVARLEKYAEHNPRFQAMLDTLLERADIVRSDAIKANVVTMNSQITLLD
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEE
EATQEPATWTIVYPDAANLELGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEI
CCCCCCCEEEEECCCCCCCEECCEECCCCHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
VFQPEANGEYTR
HHCCCCCCCCCC
>Mature Secondary Structure
MKQRLYQLTELDVARLEKYAEHNPRFQAMLDTLLERADIVRSDAIKANVVTMNSQITLLD
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEE
EATQEPATWTIVYPDAANLELGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEI
CCCCCCCEEEEECCCCCCCEECCEECCCCHHHHHHCCCCCCEEEEECCCCHHHHHHHHHH
VFQPEANGEYTR
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA