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The map label for this gene is ykgD [H]

Identifier: 189353310

GI number: 189353310

Start: 1548055

End: 1549008

Strand: Reverse

Name: ykgD [H]

Synonym: BMULJ_04550

Alternate gene names: 189353310

Gene position: 1549008-1548055 (Counterclockwise)

Preceding gene: 189353311

Following gene: 189353309

Centisome position: 62.63

GC content: 66.14

Gene sequence:

>954_bases
ATGCCCCAAGTCGACTCGCTGAGCCAGCTTCTGCAAATGATTACCGTCACCGGCGAGCTGGAGGTGCGCTGCGGCTACGG
TTCGCCGTGGCAGTTGGCGTGGGCCCGAGCCGCCGCACACGAGATTCCGTATCACGTCGTGCTGAACGGGCGCGCCGTGC
TCGAGGATGCCGGCACCGGATCGATCACGGAACTGGCAAGCGGCGACATCGTGCTGCTGCCGCATGGGGCCGCGCACGTA
CTGCACGACGGCAGCCGGCAGGTGCGGTGCGTCACGTGCAACCGTCACGGCTCGGGCGGACGGATGCGCAGCGGCCATGA
AGGTCCGGGCGAACGCCTCGACCTGCTGTGCGGACGGTTCCATATCAGACCGCCGCATGACCGGCTGATTCGCGACTACC
TGCCCACGACGCTGACGGTGCGTTACGTGAGCGGTGGCGACGACGATAGCGGCTCCGCATCGAACCAGCTTGCGAGTCTG
GTCGAGCTGATGCGGATGGTGTCGGTGGGCGACAAGCCCGGCGGATACGCAACCCTCAACGCGCTGACTTCCGCACTGTT
CACGCTCGTGCTGCGCGCGGCGAGCGAATCGGGACAAGCACCGGCAGGGTTGCTCGCGCTGGCAAGTCATCCACGGCTGG
CGCCGGCCATTTCGGCGATGTTCGCCAATCCTGCGCGACCGTGGAGCCTGCCCGAGCTGGCCGACTTGTGCAACATGTCT
CGCGCGACCTTCATGCGGCACTTTCACGACAAGCTCGGCCGCTCCGCCACGGAGCTGCTCACGGATATCCGGATGACGCT
GGCTGCAAACGAGTTGAGGAAGCCGGCGATGAGCACGGAGGCCGTGGCCGAATCGATCGGCTACCGATCGGTCGCGGCAT
TCCGGCGCATGTTCACCGACAAGATGGGGATGACGCCGGGGCAGTGGCGACGTCGAACCGATGAAGTCGAGTGA

Upstream 100 bases:

>100_bases
CCGACCACGCCTGCGCGATGCGCACCAGCATGTGCGGCGCCGCGACCGTGATCCACTGCGATGCGACGTTGTGCCCGGCC
AATTCGAATTCCAAAAGACT

Downstream 100 bases:

>100_bases
TGTATTTGCACGTAATGTTCGGGCCGAACGAACGACGTAGCGCCGCACACGGAGCGCTGATCGCGTGCTGCAGACGAGCG
ACCGTTGCCGCGCCCGTCCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MPQVDSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTGSITELASGDIVLLPHGAAHV
LHDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRFHIRPPHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASL
VELMRMVSVGDKPGGYATLNALTSALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMS
RATFMRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTDKMGMTPGQWRRRTDEVE

Sequences:

>Translated_317_residues
MPQVDSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTGSITELASGDIVLLPHGAAHV
LHDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRFHIRPPHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASL
VELMRMVSVGDKPGGYATLNALTSALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMS
RATFMRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTDKMGMTPGQWRRRTDEVE
>Mature_316_residues
PQVDSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTGSITELASGDIVLLPHGAAHVL
HDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRFHIRPPHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASLV
ELMRMVSVGDKPGGYATLNALTSALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMSR
ATFMRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTDKMGMTPGQWRRRTDEVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=313, Percent_Identity=28.7539936102236, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34407; Mature: 34276

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQVDSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTG
CCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCEEEECCCCC
SITELASGDIVLLPHGAAHVLHDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRF
CHHHHCCCCEEEECCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC
HIRPPHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASLVELMRMVSVGDKPGGYATLN
CCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ALTSALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMS
HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
RATFMRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHH
KMGMTPGQWRRRTDEVE
HCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
PQVDSLSQLLQMITVTGELEVRCGYGSPWQLAWARAAAHEIPYHVVLNGRAVLEDAGTG
CCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCEEEECCCCC
SITELASGDIVLLPHGAAHVLHDGSRQVRCVTCNRHGSGGRMRSGHEGPGERLDLLCGRF
CHHHHCCCCEEEECCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC
HIRPPHDRLIRDYLPTTLTVRYVSGGDDDSGSASNQLASLVELMRMVSVGDKPGGYATLN
CCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ALTSALFTLVLRAASESGQAPAGLLALASHPRLAPAISAMFANPARPWSLPELADLCNMS
HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
RATFMRHFHDKLGRSATELLTDIRMTLAANELRKPAMSTEAVAESIGYRSVAAFRRMFTD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHH
KMGMTPGQWRRRTDEVE
HCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]