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The map label for this gene is yodC [H]

Identifier: 189353309

GI number: 189353309

Start: 1547045

End: 1547680

Strand: Reverse

Name: yodC [H]

Synonym: BMULJ_04549

Alternate gene names: 189353309

Gene position: 1547680-1547045 (Counterclockwise)

Preceding gene: 189353310

Following gene: 189353308

Centisome position: 62.58

GC content: 66.67

Gene sequence:

>636_bases
ATGAGCAACGGAACTGCCACGACCAACGCCGTGATCGAATGCATTTTGAGCCGAAGCGCGGCGAAATACTACGACCCGGA
CGCGACGCTGACCGACGACCAGATCCGGGAGCTCGTGCGAATCGGCACCAGCGCGCCGACGTCCTTCCACCTGCAGAACT
GGCGCTTCATCGCCGTACGCACGCGCGAAGCGAAGGCGCGCCTGAGCCCGATCGCATGGAATCAGCCGGCAGTCACCGAG
GCAGCCGTGACGTTCATCGTCTGCGGCCAGCTCGTGGAGACGAGCGTGATCCCCGAACGTCTCGCGCCGCTGGTCGAAGC
GGGCGTGATGCCGGCATCGATGGTGGCGGAGTGGGAAATCCCCGCGCGCAACCTGTACATGGAGTATCCGCAACGCCGTC
GCGACGAAGCCGTGCGGACCGCCACGTTCGGTGCGGCCGCGATGATCTATGCGGCCCGCTCGCTCGGGCTCGGTTCGACG
CCGATGATCGGTTTCGATGCCGACGCGGTGCACCGCGAGTTCGGACTCGCCGACGACGAAGTGCCGGTGATGCTGCTGGC
GATCGGCGCCGAGCGTCCGGGGAACTGGGCGCAGAAGCCGCGGCGTCCGGTCACCGAAGTGCTCGACCTCGTTTGA

Upstream 100 bases:

>100_bases
GACGAACGCATCGGCCATGACGCGAATCGCGACCGACGCGATCGCACGGCGCGACAGCACGCGAGTAGCCGAACCGATTT
CCTCACCCCAAGGAGTGACC

Downstream 100 bases:

>100_bases
ACGGCTGCCACGGCGGCAATCGCAACGGAGTTCCGTTCGACAACCCATTTCGCCCCCCGAACCGGGGGAGGAAGCAACCC
GACGGATCGCGCCAGCACGG

Product: nitroreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSNGTATTNAVIECILSRSAAKYYDPDATLTDDQIRELVRIGTSAPTSFHLQNWRFIAVRTREAKARLSPIAWNQPAVTE
AAVTFIVCGQLVETSVIPERLAPLVEAGVMPASMVAEWEIPARNLYMEYPQRRRDEAVRTATFGAAAMIYAARSLGLGST
PMIGFDADAVHREFGLADDEVPVMLLAIGAERPGNWAQKPRRPVTEVLDLV

Sequences:

>Translated_211_residues
MSNGTATTNAVIECILSRSAAKYYDPDATLTDDQIRELVRIGTSAPTSFHLQNWRFIAVRTREAKARLSPIAWNQPAVTE
AAVTFIVCGQLVETSVIPERLAPLVEAGVMPASMVAEWEIPARNLYMEYPQRRRDEAVRTATFGAAAMIYAARSLGLGST
PMIGFDADAVHREFGLADDEVPVMLLAIGAERPGNWAQKPRRPVTEVLDLV
>Mature_210_residues
SNGTATTNAVIECILSRSAAKYYDPDATLTDDQIRELVRIGTSAPTSFHLQNWRFIAVRTREAKARLSPIAWNQPAVTEA
AVTFIVCGQLVETSVIPERLAPLVEAGVMPASMVAEWEIPARNLYMEYPQRRRDEAVRTATFGAAAMIYAARSLGLGSTP
MIGFDADAVHREFGLADDEVPVMLLAIGAERPGNWAQKPRRPVTEVLDLV

Specific function: Putative nitroreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23129; Mature: 22998

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGTATTNAVIECILSRSAAKYYDPDATLTDDQIRELVRIGTSAPTSFHLQNWRFIAVR
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCEEEEEEE
TREAKARLSPIAWNQPAVTEAAVTFIVCGQLVETSVIPERLAPLVEAGVMPASMVAEWEI
ECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHEECCC
PARNLYMEYPQRRRDEAVRTATFGAAAMIYAARSLGLGSTPMIGFDADAVHREFGLADDE
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
VPVMLLAIGAERPGNWAQKPRRPVTEVLDLV
CCEEEEEECCCCCCCHHHCCCCCHHHHHHCC
>Mature Secondary Structure 
SNGTATTNAVIECILSRSAAKYYDPDATLTDDQIRELVRIGTSAPTSFHLQNWRFIAVR
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEECCEEEEEEE
TREAKARLSPIAWNQPAVTEAAVTFIVCGQLVETSVIPERLAPLVEAGVMPASMVAEWEI
ECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHEECCC
PARNLYMEYPQRRRDEAVRTATFGAAAMIYAARSLGLGSTPMIGFDADAVHREFGLADDE
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
VPVMLLAIGAERPGNWAQKPRRPVTEVLDLV
CCEEEEEECCCCCCCHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]