Click here to switch to the map view.

The map label for this gene is ygeX [H]

Identifier: 189353297

GI number: 189353297

Start: 1534769

End: 1536016

Strand: Reverse

Name: ygeX [H]

Synonym: BMULJ_04537

Alternate gene names: 189353297

Gene position: 1536016-1534769 (Counterclockwise)

Preceding gene: 189353298

Following gene: 189353295

Centisome position: 62.11

GC content: 69.15

Gene sequence:

>1248_bases
ATGTTGATCGCCAATCCGCGCGCGACGCGCGCGCCGTACCCGGACGCGCTGAAGCGCATCCTGAGCATCGAGAAAGCAAA
GGAGAGTCGCGCGTGGCTCTCCTGTTGGGACATGATTGCGCCGGCACCTACACCGTTGCGCACGTTGCCTGCGCTCGCCG
CCGCGTCGGGTATCGCGAGCCTGAGCGTGAAGGACGAGTCCGCGCGCTCGGTGCTCGGCAGCTTCAAGGCGCTCGGCGCG
CCGATCGCGCTCGTGCGCCTGATTCTTCGGCTGTGGCCGGCGCACGATCTCGATCCGCGCGCATTGTTCGACGGCCGCTA
TCGCGCGTTGCTCGCGGGCTTCACCGTTGTCAGCGCAACGGATGGCAATCACGGCAAAGGGCTCGCGGCCGCTGCACAGA
CGCTCGGCTGCCGATGCGTGATCGTGCTGCATGCGAACGTCAGCATCGAACGCGAGCAGGCGATCGCCGCGTATGGCGCG
CAGATCGTCCGGATCGAAGGCAACTACGACGCATCGGTCGAGGAAGCCGCGCGGCTCGCGTCGCTGAACGGCTGGCACGT
GGTGTCCGATACGTCGTACGACGGCTACGAAGACATTCCGCGCGACGTGATGCAGGGCTACGGCACCGTCGCCGCGGAGA
TCGTCGAGCAGAGCGACGCCCGACCCGATCGGCCGGCCTATACGCATGTGTTCCTGCAGGGCGGCGTCGGCGGTCTCGCG
GCGGGCATCGTCAGCTATCTGTGGGAGTTTCACGGCGCGCATCGGCCGCGATTCGTCGTCGTCGAGCCGCAGCAGGCCGA
TTGTCTGTACCAGAGCGCGCTTGCCGGCAAACCGTCGCGCGCGACGGGCTCCGTCGATTCGGTGATGGCCGGGCTCGCGT
GCGGCGAGACGTCGCCGCTCGCGTGGCGATTCCTGCAGCCGGCCGTCGACGACTTCATGACGATCGCCGACGCCGAGGCG
ATCGATGCAATGCGCGTGCTGGCGACAGGCCGCGACGGCGACGTGCCGATCGTTGCCGGCGAGTCCGGTGCCGCGGGGCT
CGCCGGCCTCGCCGTGTTGCTGAAGGATCGCGCGCAGGCCTCGCGCGTCGGGCTCGATCGCGATTCGCGCGTGCTGATCG
TGAATACGGAAGGCGCGACTGCGCCCGACACGTATCGCGAACTGGTCGGCGAGACGGCCGACGCGGTGCTGGCGCGACAG
GCGGCCTGGGCGGCCGGCGCGGCGAACCGGGCGGCGACTCACGTCTGA

Upstream 100 bases:

>100_bases
CCCGTCTGCTGCTCGACGTCGTGCTCGATCGTCTGGCGGCCGCGTGATCGCGCCGAACGCGTCGCCTTATCCCAACCCTT
CATCGCTGGAACTTCACGAC

Downstream 100 bases:

>100_bases
GTCGGCGGCGCGTCAGGTCGCGGGGCCGATCGGAATCTCGAGCCCCGCCTTCACGCGACTCATCGTCACGAGCGTCTTGA
ACCGCTTCACGTTGTTGTTC

Product: diaminopropionate ammonia-lyase

Products: NA

Alternate protein names: Diaminopropionatase; Alpha,beta-diaminopropionate ammonia-lyase [H]

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MLIANPRATRAPYPDALKRILSIEKAKESRAWLSCWDMIAPAPTPLRTLPALAAASGIASLSVKDESARSVLGSFKALGA
PIALVRLILRLWPAHDLDPRALFDGRYRALLAGFTVVSATDGNHGKGLAAAAQTLGCRCVIVLHANVSIEREQAIAAYGA
QIVRIEGNYDASVEEAARLASLNGWHVVSDTSYDGYEDIPRDVMQGYGTVAAEIVEQSDARPDRPAYTHVFLQGGVGGLA
AGIVSYLWEFHGAHRPRFVVVEPQQADCLYQSALAGKPSRATGSVDSVMAGLACGETSPLAWRFLQPAVDDFMTIADAEA
IDAMRVLATGRDGDVPIVAGESGAAGLAGLAVLLKDRAQASRVGLDRDSRVLIVNTEGATAPDTYRELVGETADAVLARQ
AAWAAGAANRAATHV

Sequences:

>Translated_415_residues
MLIANPRATRAPYPDALKRILSIEKAKESRAWLSCWDMIAPAPTPLRTLPALAAASGIASLSVKDESARSVLGSFKALGA
PIALVRLILRLWPAHDLDPRALFDGRYRALLAGFTVVSATDGNHGKGLAAAAQTLGCRCVIVLHANVSIEREQAIAAYGA
QIVRIEGNYDASVEEAARLASLNGWHVVSDTSYDGYEDIPRDVMQGYGTVAAEIVEQSDARPDRPAYTHVFLQGGVGGLA
AGIVSYLWEFHGAHRPRFVVVEPQQADCLYQSALAGKPSRATGSVDSVMAGLACGETSPLAWRFLQPAVDDFMTIADAEA
IDAMRVLATGRDGDVPIVAGESGAAGLAGLAVLLKDRAQASRVGLDRDSRVLIVNTEGATAPDTYRELVGETADAVLARQ
AAWAAGAANRAATHV
>Mature_415_residues
MLIANPRATRAPYPDALKRILSIEKAKESRAWLSCWDMIAPAPTPLRTLPALAAASGIASLSVKDESARSVLGSFKALGA
PIALVRLILRLWPAHDLDPRALFDGRYRALLAGFTVVSATDGNHGKGLAAAAQTLGCRCVIVLHANVSIEREQAIAAYGA
QIVRIEGNYDASVEEAARLASLNGWHVVSDTSYDGYEDIPRDVMQGYGTVAAEIVEQSDARPDRPAYTHVFLQGGVGGLA
AGIVSYLWEFHGAHRPRFVVVEPQQADCLYQSALAGKPSRATGSVDSVMAGLACGETSPLAWRFLQPAVDDFMTIADAEA
IDAMRVLATGRDGDVPIVAGESGAAGLAGLAVLLKDRAQASRVGLDRDSRVLIVNTEGATAPDTYRELVGETADAVLARQ
AAWAAGAANRAATHV

Specific function: Catalyzes the alpha,beta-elimination reaction of both L- and D-alpha,beta-diaminopropionate, the most suitable substrates to form pyruvate and ammonia. The L- and D-isomers of serine are also degraded, though slowly; it is the only serine dehydratase whic

COG id: COG1171

COG function: function code E; Threonine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789235, Length=358, Percent_Identity=39.6648044692737, Blast_Score=239, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010081
- InterPro:   IPR019871
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.15 [H]

Molecular weight: Translated: 43772; Mature: 43772

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIANPRATRAPYPDALKRILSIEKAKESRAWLSCWDMIAPAPTPLRTLPALAAASGIAS
CEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE
LSVKDESARSVLGSFKALGAPIALVRLILRLWPAHDLDPRALFDGRYRALLAGFTVVSAT
EEECCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCEEEEEC
DGNHGKGLAAAAQTLGCRCVIVLHANVSIEREQAIAAYGAQIVRIEGNYDASVEEAARLA
CCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
SLNGWHVVSDTSYDGYEDIPRDVMQGYGTVAAEIVEQSDARPDRPAYTHVFLQGGVGGLA
CCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHH
AGIVSYLWEFHGAHRPRFVVVEPQQADCLYQSALAGKPSRATGSVDSVMAGLACGETSPL
HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCH
AWRFLQPAVDDFMTIADAEAIDAMRVLATGRDGDVPIVAGESGAAGLAGLAVLLKDRAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
SRVGLDRDSRVLIVNTEGATAPDTYRELVGETADAVLARQAAWAAGAANRAATHV
HHCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLIANPRATRAPYPDALKRILSIEKAKESRAWLSCWDMIAPAPTPLRTLPALAAASGIAS
CEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCE
LSVKDESARSVLGSFKALGAPIALVRLILRLWPAHDLDPRALFDGRYRALLAGFTVVSAT
EEECCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCEEEEEC
DGNHGKGLAAAAQTLGCRCVIVLHANVSIEREQAIAAYGAQIVRIEGNYDASVEEAARLA
CCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
SLNGWHVVSDTSYDGYEDIPRDVMQGYGTVAAEIVEQSDARPDRPAYTHVFLQGGVGGLA
CCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHH
AGIVSYLWEFHGAHRPRFVVVEPQQADCLYQSALAGKPSRATGSVDSVMAGLACGETSPL
HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCH
AWRFLQPAVDDFMTIADAEAIDAMRVLATGRDGDVPIVAGESGAAGLAGLAVLLKDRAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
SRVGLDRDSRVLIVNTEGATAPDTYRELVGETADAVLARQAAWAAGAANRAATHV
HHCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]