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The map label for this gene is rbcR [H]

Identifier: 189353221

GI number: 189353221

Start: 1448622

End: 1449524

Strand: Direct

Name: rbcR [H]

Synonym: BMULJ_04459

Alternate gene names: 189353221

Gene position: 1448622-1449524 (Clockwise)

Preceding gene: 189353216

Following gene: 189353222

Centisome position: 58.57

GC content: 67.22

Gene sequence:

>903_bases
ATGCGCTTCGACCTGACCGATCTGCGGCTTTTCCTGAACATCTGCGAGGCCGGCACGATCACGGGCGGCGCCGAGCGCAC
GCACATCACGCTGCAGGCCGCGAGCGAGCGCATTCGCGGGATGGAGGACGAGCTCGGCGTGCCGCTGCTGCACCGGACCA
AGGCGGGCGTGCATGCGACCGACGCCGGTCATGCGCTCGAACACCATGCGCGCACGGTGCTGCAGCAGATCGACCACATG
CGCGGCGAACTGCAGCAGTACGGGCTCGGACTGCGCGGCCATATCCGGCTGCTGTGCAACACCGCGTCGCTCAGCGAATA
CCTGCCCGACGCGCTGGCCGAGTATCTGCCGCGCCACCCGAAGCTGTCGATCAGCGTCGAGGAACGCTCGAGCCAGGAGA
TCGTGCATGCGATCCGCAGCAAGACGGCGGAGCTTGGCATCGTCGCCGATTCGGTCGGACTCGGCGGCCTCGAGCAGAAG
CCGTTTCGCGAGGACTGGCTGATCGCCGTCGTGCCGGCCGCCCATGCGCTCGCGTCGCGCGACGCGGTCGCGTTCGACGA
GATCGTCGATGCGGATTTCATCGGGCTCACGGACGGCAGCGCGCTGCAGGTCCATCTCGCCGATCAGGCGCGCGCTCTCG
GCAAGCGAATCCGGTATCGTGTGCAGCTGAAGAGTTTCGACGCGATCTGCCGCGTGATCGAAAGCGGTGTCGGGATCGGC
ATCGTGTCGCGGCACGCGGCGGAACGCGCGATGCAGACGATGGACGTGCGGCTCGTCGAGCTGTCCGATTCGTGGAGCCA
CCGAAAGCTGACGCTCTGCGCGCGGTCGTTCGACGCGCTGCCGAAATATACGCGCGAGTTCGTCGCGTTCCTGTCGGGGG
AAGTGCCGACGCAATCGCGCTGA

Upstream 100 bases:

>100_bases
AAATGCGGAAGCGGCGAATCGCGTCTCAGGCAGCGCCTGAGCATCGCGCGCGCGATTCCCTGCTACCTTATCGGCGATCC
GACAACAATACGGCCCCGCC

Downstream 100 bases:

>100_bases
TCCTGCGCGGCCACGCCGCCTGCTTGCGCCCTTGTTCGCCCGACATTGCCAGTTCCCGCATTGGTACCCGCGCTCCGCGC
CCGACATGACTGCCATCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MRFDLTDLRLFLNICEAGTITGGAERTHITLQAASERIRGMEDELGVPLLHRTKAGVHATDAGHALEHHARTVLQQIDHM
RGELQQYGLGLRGHIRLLCNTASLSEYLPDALAEYLPRHPKLSISVEERSSQEIVHAIRSKTAELGIVADSVGLGGLEQK
PFREDWLIAVVPAAHALASRDAVAFDEIVDADFIGLTDGSALQVHLADQARALGKRIRYRVQLKSFDAICRVIESGVGIG
IVSRHAAERAMQTMDVRLVELSDSWSHRKLTLCARSFDALPKYTREFVAFLSGEVPTQSR

Sequences:

>Translated_300_residues
MRFDLTDLRLFLNICEAGTITGGAERTHITLQAASERIRGMEDELGVPLLHRTKAGVHATDAGHALEHHARTVLQQIDHM
RGELQQYGLGLRGHIRLLCNTASLSEYLPDALAEYLPRHPKLSISVEERSSQEIVHAIRSKTAELGIVADSVGLGGLEQK
PFREDWLIAVVPAAHALASRDAVAFDEIVDADFIGLTDGSALQVHLADQARALGKRIRYRVQLKSFDAICRVIESGVGIG
IVSRHAAERAMQTMDVRLVELSDSWSHRKLTLCARSFDALPKYTREFVAFLSGEVPTQSR
>Mature_300_residues
MRFDLTDLRLFLNICEAGTITGGAERTHITLQAASERIRGMEDELGVPLLHRTKAGVHATDAGHALEHHARTVLQQIDHM
RGELQQYGLGLRGHIRLLCNTASLSEYLPDALAEYLPRHPKLSISVEERSSQEIVHAIRSKTAELGIVADSVGLGGLEQK
PFREDWLIAVVPAAHALASRDAVAFDEIVDADFIGLTDGSALQVHLADQARALGKRIRYRVQLKSFDAICRVIESGVGIG
IVSRHAAERAMQTMDVRLVELSDSWSHRKLTLCARSFDALPKYTREFVAFLSGEVPTQSR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=264, Percent_Identity=21.969696969697, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=24.7787610619469, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=26.1044176706827, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787530, Length=288, Percent_Identity=22.5694444444444, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787806, Length=273, Percent_Identity=21.6117216117216, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790208, Length=291, Percent_Identity=22.3367697594502, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=23.8683127572016, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=260, Percent_Identity=26.5384615384615, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787879, Length=296, Percent_Identity=22.2972972972973, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789204, Length=241, Percent_Identity=21.1618257261411, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=247, Percent_Identity=24.2914979757085, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=21.3333333333333, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788481, Length=252, Percent_Identity=22.6190476190476, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33111; Mature: 33111

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDLTDLRLFLNICEAGTITGGAERTHITLQAASERIRGMEDELGVPLLHRTKAGVHAT
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHCCCHHHCCCCHHHHCCCCCCCC
DAGHALEHHARTVLQQIDHMRGELQQYGLGLRGHIRLLCNTASLSEYLPDALAEYLPRHP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCC
KLSISVEERSSQEIVHAIRSKTAELGIVADSVGLGGLEQKPFREDWLIAVVPAAHALASR
CEEEEECCCHHHHHHHHHHHCHHHHEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHC
DAVAFDEIVDADFIGLTDGSALQVHLADQARALGKRIRYRVQLKSFDAICRVIESGVGIG
CCHHHHHHHCCCEEECCCCCEEEEEEHHHHHHHHHHHEEEEEHHHHHHHHHHHHCCCCEE
IVSRHAAERAMQTMDVRLVELSDSWSHRKLTLCARSFDALPKYTREFVAFLSGEVPTQSR
HHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRFDLTDLRLFLNICEAGTITGGAERTHITLQAASERIRGMEDELGVPLLHRTKAGVHAT
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHCCCHHHCCCCHHHHCCCCCCCC
DAGHALEHHARTVLQQIDHMRGELQQYGLGLRGHIRLLCNTASLSEYLPDALAEYLPRHP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCC
KLSISVEERSSQEIVHAIRSKTAELGIVADSVGLGGLEQKPFREDWLIAVVPAAHALASR
CEEEEECCCHHHHHHHHHHHCHHHHEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHC
DAVAFDEIVDADFIGLTDGSALQVHLADQARALGKRIRYRVQLKSFDAICRVIESGVGIG
CCHHHHHHHCCCEEECCCCCEEEEEEHHHHHHHHHHHEEEEEHHHHHHHHHHHHCCCCEE
IVSRHAAERAMQTMDVRLVELSDSWSHRKLTLCARSFDALPKYTREFVAFLSGEVPTQSR
HHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]