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The map label for this gene is nlpD [C]

Identifier: 189353219

GI number: 189353219

Start: 1447274

End: 1448128

Strand: Reverse

Name: nlpD [C]

Synonym: BMULJ_04457

Alternate gene names: 189353219

Gene position: 1448128-1447274 (Counterclockwise)

Preceding gene: 189353220

Following gene: 189353218

Centisome position: 58.55

GC content: 72.4

Gene sequence:

>855_bases
ATGGAAAAGCATCGACTCTATCGCCGTGCGGCATGGGCATTCGGCCTCGCTGCCGTGCTCGCGATGGCCGGCTGCGCGAG
CACGCCGCCCGTTCCGCCGAGCGATACGCTTGCCGGCCCCGCGCGACCGGCGGCACCGGCGCAGCCCGCCGCGGCATCGG
CACCCGCGCCGGCGCCTGCGCCGATCCTGGTCGCGCACGACTACGTCGTGAAGCGTGGCGACACGCTGACGGGCATTGCG
AACGCGAACGACTGCAGCGTCGCCGATCTGCGGCTCTGGAACAAGCTCGGCGCGCGCAGCAGACTGCGCACCGGGCAGGT
ATTGCGGATCGTGAAGCAGGATGTGCAGCGGCCGCCGGCGACGACGGGCAGCACGCAGGCGTCGGCGCCGGCCGCCGCGA
GCGACGCGACGGCCGCCGCGCGGCCGAGCGAGTCGAGCGCGAGCGATCGCGAGGTCGTCCAGCAGACGAAGCGTCACGCG
CGCGGCGTCGCGCTCGCCTGGCCTGCGCACGGCCGGATCGTCGACACGTTCCGCCCCGGCCAGAACCGCGGGATCCAGAT
CGCAGGCCGCCCCGGCGACCCGGTGCGCGCGGCCGCCGACGGCCGCGTGATGTATGCGGGCACCGGGCTCAACGACTACG
GCAGCCTGATCATCGTCCAGCACAACGCGGATTTCCTGACCGCGTACGCGCACAACCGCAAGCTGCTCGTGAAGACGGGC
GACGTCGTGCATCAGGGCGACGAGATCGCCGAGATGGGCGACCTCGACAACTCGCGCGTCGCGCTGCTGTTCGAAGTGCG
GCGCGACGGCAAGCCGGTCAATCCGCTGCCGTATCTGCCGGCGCCGCAGGGCTGA

Upstream 100 bases:

>100_bases
TCGTTTGTCATCATTGTTTGCATCCGGTTACACGTCGGCCGTTCCGTTTTTGAGATGCTTGAAAGCTTGTAAAACGGACA
CCGGTAGCACCGGTTCGACG

Downstream 100 bases:

>100_bases
GGCGCGAACGCGCAGCCGCGCCGCTGGAACGCGGCGGCGCTCGCTGATACGCTAGGGTCTGTTCATCGCGCCTCACGGGT
GAGGCCGCCGGTGCGTGTAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MEKHRLYRRAAWAFGLAAVLAMAGCASTPPVPPSDTLAGPARPAAPAQPAAASAPAPAPAPILVAHDYVVKRGDTLTGIA
NANDCSVADLRLWNKLGARSRLRTGQVLRIVKQDVQRPPATTGSTQASAPAAASDATAAARPSESSASDREVVQQTKRHA
RGVALAWPAHGRIVDTFRPGQNRGIQIAGRPGDPVRAAADGRVMYAGTGLNDYGSLIIVQHNADFLTAYAHNRKLLVKTG
DVVHQGDEIAEMGDLDNSRVALLFEVRRDGKPVNPLPYLPAPQG

Sequences:

>Translated_284_residues
MEKHRLYRRAAWAFGLAAVLAMAGCASTPPVPPSDTLAGPARPAAPAQPAAASAPAPAPAPILVAHDYVVKRGDTLTGIA
NANDCSVADLRLWNKLGARSRLRTGQVLRIVKQDVQRPPATTGSTQASAPAAASDATAAARPSESSASDREVVQQTKRHA
RGVALAWPAHGRIVDTFRPGQNRGIQIAGRPGDPVRAAADGRVMYAGTGLNDYGSLIIVQHNADFLTAYAHNRKLLVKTG
DVVHQGDEIAEMGDLDNSRVALLFEVRRDGKPVNPLPYLPAPQG
>Mature_284_residues
MEKHRLYRRAAWAFGLAAVLAMAGCASTPPVPPSDTLAGPARPAAPAQPAAASAPAPAPAPILVAHDYVVKRGDTLTGIA
NANDCSVADLRLWNKLGARSRLRTGQVLRIVKQDVQRPPATTGSTQASAPAAASDATAAARPSESSASDREVVQQTKRHA
RGVALAWPAHGRIVDTFRPGQNRGIQIAGRPGDPVRAAADGRVMYAGTGLNDYGSLIIVQHNADFLTAYAHNRKLLVKTG
DVVHQGDEIAEMGDLDNSRVALLFEVRRDGKPVNPLPYLPAPQG

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=37.3540856031128, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI87082174, Length=221, Percent_Identity=34.841628959276, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082297, Length=125, Percent_Identity=36.8, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 29865; Mature: 29865

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKHRLYRRAAWAFGLAAVLAMAGCASTPPVPPSDTLAGPARPAAPAQPAAASAPAPAPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PILVAHDYVVKRGDTLTGIANANDCSVADLRLWNKLGARSRLRTGQVLRIVKQDVQRPPA
CEEEECCEEEECCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
TTGSTQASAPAAASDATAAARPSESSASDREVVQQTKRHARGVALAWPAHGRIVDTFRPG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEECCCCC
QNRGIQIAGRPGDPVRAAADGRVMYAGTGLNDYGSLIIVQHNADFLTAYAHNRKLLVKTG
CCCCEEEECCCCCCCEECCCCEEEEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECC
DVVHQGDEIAEMGDLDNSRVALLFEVRRDGKPVNPLPYLPAPQG
CCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEKHRLYRRAAWAFGLAAVLAMAGCASTPPVPPSDTLAGPARPAAPAQPAAASAPAPAPA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PILVAHDYVVKRGDTLTGIANANDCSVADLRLWNKLGARSRLRTGQVLRIVKQDVQRPPA
CEEEECCEEEECCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
TTGSTQASAPAAASDATAAARPSESSASDREVVQQTKRHARGVALAWPAHGRIVDTFRPG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEECCCCC
QNRGIQIAGRPGDPVRAAADGRVMYAGTGLNDYGSLIIVQHNADFLTAYAHNRKLLVKTG
CCCCEEEECCCCCCCEECCCCEEEEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEECC
DVVHQGDEIAEMGDLDNSRVALLFEVRRDGKPVNPLPYLPAPQG
CCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]