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The map label for this gene is ddpA [H]

Identifier: 189353207

GI number: 189353207

Start: 1434164

End: 1435753

Strand: Direct

Name: ddpA [H]

Synonym: BMULJ_04443

Alternate gene names: 189353207

Gene position: 1434164-1435753 (Clockwise)

Preceding gene: 189353206

Following gene: 189353208

Centisome position: 57.99

GC content: 66.23

Gene sequence:

>1590_bases
ATGAAGCATCTGCTGTCCCGGCTGTTCGTCAGCGCCGCACTCGTCGCGCTCGTTCCGGCGCTGCCGGCCGACGCGGCGAC
GCCGCCCGGCATCTTCGTCGTCGCCACGCAGCTCGGCGAATTCACGACGCTCGATCCGAGCCAGATCTACGAGCTCGTGC
CGTCCGAGTATGTCGCGAACACCTACGAACGGCTCGTGCGCGTCGACCTGAAAGACCCGACGCGCTTCAACGGACAGATC
GCGCAGTCGTGGACGGTCGGCGCCGACGGCCGCACCTACACCTTCAAGCTGCGCCCCGGCCTCACGTTCCACTCCGGCAA
TCCGCTGACCGCCGACGACGTCGCGTGGTCGCTGCAGCGCACCGTACTGCTCGACAAGGGGCCGGCCGGCGTGCTCGCCG
ATCTCGGCCTGACGAAGGCGAACGTCATGCAGAAGGTGCGCGCGCTCGACGCGCAAACCTTCGTGCTCGAGACCGACCGT
GCGTACGCGCCGAGCTTCGTGCTGAACGTGCTGAGCGCGTGCCCGGCATCGGTGCTCGACAAGAAGCTGCTGCTGTCGCA
CCAGCAGGGCGACGACTTCGGCAGCGGCTGGCTGAAGACCAACGATGCGGGCTCCGGCCCGTACCGGCTCGTCAAGTGGA
CGCCGAACGAAAGCATCGTGCTGCAGCGCTTCGATCAGTACCGCACGCCGTATCCGATGAAGCGCGTCGTGCTGCGCCAC
GTGCCGGAGGCATCCGCGCAGCGGCTGCTGCTCGAGAACGGCGACGTCGACGCCGCGCGCAATCTGAGCCCCGACAGCCT
CGCCGCACTGACGAAGGCCGGCAAGATCAAGGTCGCCGCGTGGCCGGTGTCCGCGCTGCTGTATCTGAGCCTGAACACGA
AGAATCCGAATCTCGCGAAGCCGGACGTGCAGCAGGCGATGAAGTGGCTCGTCGATTACGACGGCATCCAGCGCAACATC
GTCAGCACGACGTACAAGGTCCATCAAACTTTCCTGCCCGAGGGCTTCCTCGGCACGCTGAACGCGCGGCCCTACAAGCA
GGACGTCGCGAAGGCGAAGGCGCTGCTCGCGAAGGCCGGCCTGCCGAACGGCTTCGACGTGACGATGGACATGCCGAACG
ACTATCCGTACATCGAGATCGCCCAGGCGCTGCAGGCGAACTTCGCGCAAGGCGGGATCCGCGTGAAGCTGATCGCCGGC
GATGCGAAGCAGGCGATCGGCAAGTACCGCGCGCGTCAGCACGACATCTTCATCGGCGAATGGTCGCCCGACTACATGGA
CCCGAACAGCAACGCGCGCGGCTTCGCGTGGAATCCGGACAATTCGGATCAGGCGAAGACGAAGATGCTCGCGTGGCGCA
ACAGCTGGGACATTCCGCAGCTGACGAAGGACACCGAGGCCGCGCTCGTCGAGCCGTCGCCCGCGAAGCGCGCGCAGCGC
TATGAGGCGCTGCAGAAGGCCGTCCTCGCGAACTCACCGTTCGTCATCATGTTCGAGAAGGTCGTGCAGGTCGCGACGCG
ACCGGGCGTGACGGGCCCGGAGATCGGGCCGATCAACGATCTCGTGTCGTACCGGACGCTCGCGAAGTAA

Upstream 100 bases:

>100_bases
GCGCGCCCGTGCCGGCGCGAGACGCGCGGCATCGAATACTTTCGTCCGGGCTACGGTCGATGAGAGAATCGCACGACGAT
TCCCTTCCGATGGAGCCCGC

Downstream 100 bases:

>100_bases
GGCGCGCGTCGCGGCTCGCGTGGATCGGCGCGGTCGATCGCATGCGGGCCGCGTCGCGTAGCTGGACGATATTCAATATC
TCGAGAAACACGAGATCCGC

Product: peptide/nickel transport system substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MKHLLSRLFVSAALVALVPALPADAATPPGIFVVATQLGEFTTLDPSQIYELVPSEYVANTYERLVRVDLKDPTRFNGQI
AQSWTVGADGRTYTFKLRPGLTFHSGNPLTADDVAWSLQRTVLLDKGPAGVLADLGLTKANVMQKVRALDAQTFVLETDR
AYAPSFVLNVLSACPASVLDKKLLLSHQQGDDFGSGWLKTNDAGSGPYRLVKWTPNESIVLQRFDQYRTPYPMKRVVLRH
VPEASAQRLLLENGDVDAARNLSPDSLAALTKAGKIKVAAWPVSALLYLSLNTKNPNLAKPDVQQAMKWLVDYDGIQRNI
VSTTYKVHQTFLPEGFLGTLNARPYKQDVAKAKALLAKAGLPNGFDVTMDMPNDYPYIEIAQALQANFAQGGIRVKLIAG
DAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDQAKTKMLAWRNSWDIPQLTKDTEAALVEPSPAKRAQR
YEALQKAVLANSPFVIMFEKVVQVATRPGVTGPEIGPINDLVSYRTLAK

Sequences:

>Translated_529_residues
MKHLLSRLFVSAALVALVPALPADAATPPGIFVVATQLGEFTTLDPSQIYELVPSEYVANTYERLVRVDLKDPTRFNGQI
AQSWTVGADGRTYTFKLRPGLTFHSGNPLTADDVAWSLQRTVLLDKGPAGVLADLGLTKANVMQKVRALDAQTFVLETDR
AYAPSFVLNVLSACPASVLDKKLLLSHQQGDDFGSGWLKTNDAGSGPYRLVKWTPNESIVLQRFDQYRTPYPMKRVVLRH
VPEASAQRLLLENGDVDAARNLSPDSLAALTKAGKIKVAAWPVSALLYLSLNTKNPNLAKPDVQQAMKWLVDYDGIQRNI
VSTTYKVHQTFLPEGFLGTLNARPYKQDVAKAKALLAKAGLPNGFDVTMDMPNDYPYIEIAQALQANFAQGGIRVKLIAG
DAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDQAKTKMLAWRNSWDIPQLTKDTEAALVEPSPAKRAQR
YEALQKAVLANSPFVIMFEKVVQVATRPGVTGPEIGPINDLVSYRTLAK
>Mature_529_residues
MKHLLSRLFVSAALVALVPALPADAATPPGIFVVATQLGEFTTLDPSQIYELVPSEYVANTYERLVRVDLKDPTRFNGQI
AQSWTVGADGRTYTFKLRPGLTFHSGNPLTADDVAWSLQRTVLLDKGPAGVLADLGLTKANVMQKVRALDAQTFVLETDR
AYAPSFVLNVLSACPASVLDKKLLLSHQQGDDFGSGWLKTNDAGSGPYRLVKWTPNESIVLQRFDQYRTPYPMKRVVLRH
VPEASAQRLLLENGDVDAARNLSPDSLAALTKAGKIKVAAWPVSALLYLSLNTKNPNLAKPDVQQAMKWLVDYDGIQRNI
VSTTYKVHQTFLPEGFLGTLNARPYKQDVAKAKALLAKAGLPNGFDVTMDMPNDYPYIEIAQALQANFAQGGIRVKLIAG
DAKQAIGKYRARQHDIFIGEWSPDYMDPNSNARGFAWNPDNSDQAKTKMLAWRNSWDIPQLTKDTEAALVEPSPAKRAQR
YEALQKAVLANSPFVIMFEKVVQVATRPGVTGPEIGPINDLVSYRTLAK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=525, Percent_Identity=30.0952380952381, Blast_Score=178, Evalue=1e-45,
Organism=Escherichia coli, GI1787052, Length=524, Percent_Identity=25, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1789966, Length=477, Percent_Identity=24.5283018867925, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1787551, Length=547, Percent_Identity=24.6800731261426, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1789887, Length=427, Percent_Identity=26.6978922716628, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787495, Length=455, Percent_Identity=25.2747252747253, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1789397, Length=563, Percent_Identity=24.866785079929, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58218; Mature: 58218

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLLSRLFVSAALVALVPALPADAATPPGIFVVATQLGEFTTLDPSQIYELVPSEYVAN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHHH
TYERLVRVDLKDPTRFNGQIAQSWTVGADGRTYTFKLRPGLTFHSGNPLTADDVAWSLQR
HHHHHEEECCCCCCCCCCEEECEEEECCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHH
TVLLDKGPAGVLADLGLTKANVMQKVRALDAQTFVLETDRAYAPSFVLNVLSACPASVLD
EEEEECCCCCHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCHHHHH
KKLLLSHQQGDDFGSGWLKTNDAGSGPYRLVKWTPNESIVLQRFDQYRTPYPMKRVVLRH
HHHHHHCCCCCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHH
VPEASAQRLLLENGDVDAARNLSPDSLAALTKAGKIKVAAWPVSALLYLSLNTKNPNLAK
CCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCCCCCCC
PDVQQAMKWLVDYDGIQRNIVSTTYKVHQTFLPEGFLGTLNARPYKQDVAKAKALLAKAG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCC
LPNGFDVTMDMPNDYPYIEIAQALQANFAQGGIRVKLIAGDAKQAIGKYRARQHDIFIGE
CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCEEEEC
WSPDYMDPNSNARGFAWNPDNSDQAKTKMLAWRNSWDIPQLTKDTEAALVEPSPAKRAQR
CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHHHH
YEALQKAVLANSPFVIMFEKVVQVATRPGVTGPEIGPINDLVSYRTLAK
HHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKHLLSRLFVSAALVALVPALPADAATPPGIFVVATQLGEFTTLDPSQIYELVPSEYVAN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCHHHHHH
TYERLVRVDLKDPTRFNGQIAQSWTVGADGRTYTFKLRPGLTFHSGNPLTADDVAWSLQR
HHHHHEEECCCCCCCCCCEEECEEEECCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHH
TVLLDKGPAGVLADLGLTKANVMQKVRALDAQTFVLETDRAYAPSFVLNVLSACPASVLD
EEEEECCCCCHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCHHHHH
KKLLLSHQQGDDFGSGWLKTNDAGSGPYRLVKWTPNESIVLQRFDQYRTPYPMKRVVLRH
HHHHHHCCCCCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHH
VPEASAQRLLLENGDVDAARNLSPDSLAALTKAGKIKVAAWPVSALLYLSLNTKNPNLAK
CCCHHHHHHHHCCCCCCHHCCCCHHHHHHHHCCCCEEEEEECCEEEEEEEEECCCCCCCC
PDVQQAMKWLVDYDGIQRNIVSTTYKVHQTFLPEGFLGTLNARPYKQDVAKAKALLAKAG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCC
LPNGFDVTMDMPNDYPYIEIAQALQANFAQGGIRVKLIAGDAKQAIGKYRARQHDIFIGE
CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCEEEEC
WSPDYMDPNSNARGFAWNPDNSDQAKTKMLAWRNSWDIPQLTKDTEAALVEPSPAKRAQR
CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCHHHHHHH
YEALQKAVLANSPFVIMFEKVVQVATRPGVTGPEIGPINDLVSYRTLAK
HHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]