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The map label for this gene is dacB [H]

Identifier: 189353194

GI number: 189353194

Start: 1420718

End: 1421812

Strand: Direct

Name: dacB [H]

Synonym: BMULJ_04430

Alternate gene names: 189353194

Gene position: 1420718-1421812 (Clockwise)

Preceding gene: 189353193

Following gene: 189353195

Centisome position: 57.45

GC content: 68.4

Gene sequence:

>1095_bases
TTGACCGGCCTCATCGCGCGCCTGCCTCTCGCCCGGACCACCCTGCTCATCGCGTTGTCGATCCTGACGTTCGCGTTCGC
GACGAACGCATCGTCCGCGCAACGCCACCCGCCCCAGCGTGCCGCGCATGCCGCGCCGCATGCGAAAGCCGTCAAGAAAA
CGGTCAAGAAAAAGCCTGCGCAGCGCAAGAAAAAGGCCGTCAAGCATCGCCGCCCGCGCGTGAAGCACCACGCAATCCAG
CGCCACGCGGCACCGGCTCCGCAGCAGCGGCGCGCGAAACGCACGACGGCGGCCCGCCCGCATCCCGCCGCGAAACCGCG
CCTGCTGGCGAGTTGCGGTTACAACCCGCGTGCGGTCCGATCGCTCCATTCGCGCGCCGCCTACGTGCTCGACGTCGATT
CCGGCACGCCGCTGCTGGCCCGGAATGCGCGCACGGTGCGGCCGATCGCGTCGATCTCGAAACTGATGACGGCCGTCGTC
GCACGCGATGCCGATCGGCCGCTGAACGGCGTGCTGCGCGTCACCGCGAACGATCGCGACACGATCAAGTTCACCGGTTC
GCGCCTGCAGGTCGGCTCGGAGCTGTCGCGCCGCGACATGTTCCATATCGCGCTGATGTCGTCGGAGAACCGCGCGGCCG
CCGCGCTGAGCCGCGACTATCCGGGCGGCCGCGCCGCCTTCGTCAAGGCGATGAATCGCGAAGCGCGCCGGCTCGGCATG
CGCCATACGCATTTCAGAGAACCGACCGGGTTGTCGCCGCACAACGTGTCGACGGCCGAGGATCTCGCGCGGCTCGTCGA
CGCGGCCGCACAGGATCCGCTGATCCGCTACTTCTCGACCGACAGGTCCACCACCGTGCGCCCCGGCGACGGCGAACTGC
TGTATGTGAATTCCGATCCGCTCGTCCGCTATCGCCGCCTGCCGATCCGCCTGCAGAAAACCGGCTTCATCAACGAATCG
GGTCACGGCGTCGTGATGCGCATGCGCGTGAAAGGTCGCCGCACGACCGTCGTGCTGCTCGGCGCACCGACGCGCGCCGG
CGTCTCGAGCGACGCGATCACGATCCACCGCTGGCTGGCCTGCTCTATCCAGTAA

Upstream 100 bases:

>100_bases
TCCATCGTCATCGCGCCGCGATCGACCGTATAATTTTCCGCTCCCCTGACCGCTCAACCATGCCACGCTGCGTCGTCGCG
CGTGAAAAGGAGCTTTTCGC

Downstream 100 bases:

>100_bases
GCGCGCAGGCGGCCGACGCGTGCATCTTCGGGAGCGATGCGATGCCGGACGAGTACCGCTTCAATGCATTCGGGCGCCGT
CTCGCCGTCGTGCGTCATAA

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: DD-endopeptidase; Penicillin-binding protein 5; PBP-5 [H]

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MTGLIARLPLARTTLLIALSILTFAFATNASSAQRHPPQRAAHAAPHAKAVKKTVKKKPAQRKKKAVKHRRPRVKHHAIQ
RHAAPAPQQRRAKRTTAARPHPAAKPRLLASCGYNPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVV
ARDADRPLNGVLRVTANDRDTIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGM
RHTHFREPTGLSPHNVSTAEDLARLVDAAAQDPLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINES
GHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAITIHRWLACSIQ

Sequences:

>Translated_364_residues
MTGLIARLPLARTTLLIALSILTFAFATNASSAQRHPPQRAAHAAPHAKAVKKTVKKKPAQRKKKAVKHRRPRVKHHAIQ
RHAAPAPQQRRAKRTTAARPHPAAKPRLLASCGYNPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVV
ARDADRPLNGVLRVTANDRDTIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGM
RHTHFREPTGLSPHNVSTAEDLARLVDAAAQDPLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINES
GHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAITIHRWLACSIQ
>Mature_363_residues
TGLIARLPLARTTLLIALSILTFAFATNASSAQRHPPQRAAHAAPHAKAVKKTVKKKPAQRKKKAVKHRRPRVKHHAIQR
HAAPAPQQRRAKRTTAARPHPAAKPRLLASCGYNPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVA
RDADRPLNGVLRVTANDRDTIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGMR
HTHFREPTGLSPHNVSTAEDLARLVDAAAQDPLIRYFSTDRSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESG
HGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAITIHRWLACSIQ

Specific function: Cell wall formation [H]

COG id: COG1686

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S11 family [H]

Homologues:

Organism=Escherichia coli, GI87082054, Length=238, Percent_Identity=44.1176470588235, Blast_Score=184, Evalue=9e-48,
Organism=Escherichia coli, GI87082022, Length=253, Percent_Identity=28.4584980237154, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR018044
- InterPro:   IPR001967 [H]

Pfam domain/function: PF00768 Peptidase_S11 [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 40129; Mature: 39998

Theoretical pI: Translated: 12.29; Mature: 12.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLIARLPLARTTLLIALSILTFAFATNASSAQRHPPQRAAHAAPHAKAVKKTVKKKPA
CCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHCCCHHHHHHHHHHHCHH
QRKKKAVKHRRPRVKHHAIQRHAAPAPQQRRAKRTTAARPHPAAKPRLLASCGYNPRAVR
HHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHH
SLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVLRVTANDRD
HHHHCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
TIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGM
EEEECCCEEECCHHHHHCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
RHTHFREPTGLSPHNVSTAEDLARLVDAAAQDPLIRYFSTDRSTTVRPGDGELLYVNSDP
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCEEEECCCC
LVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAITIHRWLA
CEEEECCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEE
CSIQ
EECC
>Mature Secondary Structure 
TGLIARLPLARTTLLIALSILTFAFATNASSAQRHPPQRAAHAAPHAKAVKKTVKKKPA
CCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHCCCHHHHHHHHHHHCHH
QRKKKAVKHRRPRVKHHAIQRHAAPAPQQRRAKRTTAARPHPAAKPRLLASCGYNPRAVR
HHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHH
SLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRPLNGVLRVTANDRD
HHHHCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
TIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGRAAFVKAMNREARRLGM
EEEECCCEEECCHHHHHCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
RHTHFREPTGLSPHNVSTAEDLARLVDAAAQDPLIRYFSTDRSTTVRPGDGELLYVNSDP
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCEEEECCCC
LVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAITIHRWLA
CEEEECCCEEEECCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEE
CSIQ
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]