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The map label for this gene is pocR [H]

Identifier: 189353128

GI number: 189353128

Start: 1320330

End: 1321253

Strand: Direct

Name: pocR [H]

Synonym: BMULJ_04364

Alternate gene names: 189353128

Gene position: 1320330-1321253 (Clockwise)

Preceding gene: 189353127

Following gene: 189353129

Centisome position: 53.39

GC content: 68.4

Gene sequence:

>924_bases
ATGTCCTCCCCCGCCCCGCCGCGCCTGTACGGGATGCCCGAACGCAGCGACCGGCTCGATTTCTACATCCGCGATCAGGC
GTCGCGGCAGGCGATCACCGAGCCGCACCGGCACGCGTATTTCCAGATCCAGTTCAATCTCGGCGGCGACACCGAGCAGC
GGATCGGCGGCGTCACGCGGCCGTTTCCGCGCGGCGCGCTCGCGTTCGTGCTGCCGTATCGCGAGCATCTGATTCCGCAT
CCGGAAGGCGCCCACTTCATCGTGATCAACTTCAGCCAGGCGTTCCTGCGCGCGGATCTCGACGTCGACCCGCTCGATCT
CGAGGACGTGCCCGCGCACCGTTTTCCCGAACTGACGCCGTTCCGCTTCCAGGAGCATCTCGATTTCATCCTGACCGGCG
ACACGTTCGACGAGGCGCGCCGCCTCGCGCTGTGCATGATCGACGCGGACCGTGCGCGCACGTTCGGCTCGACGACGCTG
CTGCGCGGCTACCTGCTGCAGCTGATCGGCCTCGTCTGCACGCAGTACGCCGGTGCGCTCGACAAGCTCGCGCAGCGCGG
CGCACAGCGCGCAGGCCGGCGCGATGCGCTCGCGCGCGTGCTGCGCCACGTGCGCGCGAACCTGACGCGCGAGGATCTGA
CGCTCGCGGCGACCGCGGAAGCGGCGTTCCTGTCGCCGAACTATCTCGCGCATCTGATCCGCAAGGAAACCGGCAGCACG
TTTACCGATCTCGTGACCGAACGCCGCATCGCGCTCGCGCAGTCGCTGCTCGCGCATACGAGCCGACGCATTGCCGACAT
CGCGCGCTCGGTCGGGTTTCGCGACGAAGGCTATTTCGCGCGGCGGTTTCGCGCGCGTGTCGGGGTGTCGCCGAAGGCGT
ATCGTGACGCGAACGCGGCGCTGCCGGTTGACGATGACGCGTGA

Upstream 100 bases:

>100_bases
GCCGCTCGTCGCGGGCTGAGCGCGGGCCGCGCCGATTCCGGCCGCGCGCGGTTCGCTGTACCATCGCGGCTCCACAGCGT
CACGAACCGCAGAATCCGTC

Downstream 100 bases:

>100_bases
GTGGACGACGCCTGAGCGGTACGGGGTTGATGGGGGCGGTCGGCGGGTGGGCGGCGGGCCTCGGAGCGCGGGCCGGCAAT
CGATGCGGTTGTCGCATGTT

Product: putative AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSSPAPPRLYGMPERSDRLDFYIRDQASRQAITEPHRHAYFQIQFNLGGDTEQRIGGVTRPFPRGALAFVLPYREHLIPH
PEGAHFIVINFSQAFLRADLDVDPLDLEDVPAHRFPELTPFRFQEHLDFILTGDTFDEARRLALCMIDADRARTFGSTTL
LRGYLLQLIGLVCTQYAGALDKLAQRGAQRAGRRDALARVLRHVRANLTREDLTLAATAEAAFLSPNYLAHLIRKETGST
FTDLVTERRIALAQSLLAHTSRRIADIARSVGFRDEGYFARRFRARVGVSPKAYRDANAALPVDDDA

Sequences:

>Translated_307_residues
MSSPAPPRLYGMPERSDRLDFYIRDQASRQAITEPHRHAYFQIQFNLGGDTEQRIGGVTRPFPRGALAFVLPYREHLIPH
PEGAHFIVINFSQAFLRADLDVDPLDLEDVPAHRFPELTPFRFQEHLDFILTGDTFDEARRLALCMIDADRARTFGSTTL
LRGYLLQLIGLVCTQYAGALDKLAQRGAQRAGRRDALARVLRHVRANLTREDLTLAATAEAAFLSPNYLAHLIRKETGST
FTDLVTERRIALAQSLLAHTSRRIADIARSVGFRDEGYFARRFRARVGVSPKAYRDANAALPVDDDA
>Mature_306_residues
SSPAPPRLYGMPERSDRLDFYIRDQASRQAITEPHRHAYFQIQFNLGGDTEQRIGGVTRPFPRGALAFVLPYREHLIPHP
EGAHFIVINFSQAFLRADLDVDPLDLEDVPAHRFPELTPFRFQEHLDFILTGDTFDEARRLALCMIDADRARTFGSTTLL
RGYLLQLIGLVCTQYAGALDKLAQRGAQRAGRRDALARVLRHVRANLTREDLTLAATAEAAFLSPNYLAHLIRKETGSTF
TDLVTERRIALAQSLLAHTSRRIADIARSVGFRDEGYFARRFRARVGVSPKAYRDANAALPVDDDA

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=107, Percent_Identity=33.6448598130841, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786251, Length=106, Percent_Identity=33.9622641509434, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34585; Mature: 34454

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPAPPRLYGMPERSDRLDFYIRDQASRQAITEPHRHAYFQIQFNLGGDTEQRIGGVTR
CCCCCCCCEECCCCCCCCCEEEECCCHHHHHHCCCCCCEEEEEEEECCCCHHHHHCCCCC
PFPRGALAFVLPYREHLIPHPEGAHFIVINFSQAFLRADLDVDPLDLEDVPAHRFPELTP
CCCCCCEEEEECHHHHCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
FRFQEHLDFILTGDTFDEARRLALCMIDADRARTFGSTTLLRGYLLQLIGLVCTQYAGAL
HHHHHCCCEEEECCCHHHHHHEEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DKLAQRGAQRAGRRDALARVLRHVRANLTREDLTLAATAEAAFLSPNYLAHLIRKETGST
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHEEEEEECHHHHCCHHHHHHHHHHHCCCH
FTDLVTERRIALAQSLLAHTSRRIADIARSVGFRDEGYFARRFRARVGVSPKAYRDANAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHCCCCCC
LPVDDDA
CCCCCCC
>Mature Secondary Structure 
SSPAPPRLYGMPERSDRLDFYIRDQASRQAITEPHRHAYFQIQFNLGGDTEQRIGGVTR
CCCCCCCEECCCCCCCCCEEEECCCHHHHHHCCCCCCEEEEEEEECCCCHHHHHCCCCC
PFPRGALAFVLPYREHLIPHPEGAHFIVINFSQAFLRADLDVDPLDLEDVPAHRFPELTP
CCCCCCEEEEECHHHHCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
FRFQEHLDFILTGDTFDEARRLALCMIDADRARTFGSTTLLRGYLLQLIGLVCTQYAGAL
HHHHHCCCEEEECCCHHHHHHEEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DKLAQRGAQRAGRRDALARVLRHVRANLTREDLTLAATAEAAFLSPNYLAHLIRKETGST
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHEEEEEECHHHHCCHHHHHHHHHHHCCCH
FTDLVTERRIALAQSLLAHTSRRIADIARSVGFRDEGYFARRFRARVGVSPKAYRDANAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHCCCCCC
LPVDDDA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]