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The map label for this gene is xylR [H]

Identifier: 189353065

GI number: 189353065

Start: 1236946

End: 1238139

Strand: Direct

Name: xylR [H]

Synonym: BMULJ_04299

Alternate gene names: 189353065

Gene position: 1236946-1238139 (Clockwise)

Preceding gene: 189353059

Following gene: 189353066

Centisome position: 50.01

GC content: 68.43

Gene sequence:

>1194_bases
ATGAACCGCGCCCGTTCCGCCCCGACACCGCACCGCATTGCGCTGCTGTTCAACGCCAACAAGGTCTACGACCGCGAAAT
CATCAGCGGGATCGGCCAGTACCTGCACTCGACGCGCGTCGTGTGGGACCTGTTCCTCGAAGACGACTTCCGCTGCCGGC
TCGCCGGCATCGAGCGCTTCGACGGCGACGGCATCATCGCGGATTTCGACGACCCGGCCGTCGCCGACGCACTCGCCGGC
TCGCCGCTGCCGATCGTCGCAGTCGGATCGTCGTACGAGGATCCGTCCCACTATCCGGACGGCGTCCCCTACATCGCCAC
CGACAACCCGAAGCTCGTGTCGCTCGCCTATACGCATCTGATCGGCGCGGGGCTGCCGCATTTCGCGATGTACAGCCTGC
CGGCCGCGCAGGAAAACCGCTGGGCGCAGCAGCGCGAACTCGCGTTCGACCGGCTCGCGCGTGCCGACGGCCTCGATGCG
CCGATCTACCGCGGGCTGCCGACGACGGCGTCCGGCTGGAACCATGCGATCGAGCAGCTGATCGGCTGGCTGAACGCGCT
GCCGAAGCCGGTCGGCGTGATCGCGGTGACCGACGCGCGTGCGCGGCATCTGCTGCAGGCGTGCCTGATCGCCGGCATCG
CGGTGCCGGAGCAGGTCGCGATCATCGGGATCGACAACGATCCGCTCACGCGCACGCTGACGCGCATTCCGCTGTCGTCG
GTGATCCAGGGCACCGAGGAGATGGGCCGCACGGCCGCGCACCTGCTGCACCGGATGCTGCGCGGCGCACGCTTTCCGGG
GCAGCGCATCCTCGTGCCGCCGGTCGGCATCAACGTGCTCGAATCGACGCGCCATCAGCCGGTCGCGAGCCCGCACGTGA
TGCGCGCGCGGCACTTCATCCGCCAGTACGCGTGCCAGGGCATCAAGACCGAGCAGGTCGCCGACTATGTCGGCGTGTCG
CGCTCGCTGCTCGAAGAACACTTCCGGCGCGAACTGCAGCGCACCGTCCATCAGGAAATCCTGCGTCACAAGCTCGAGGC
CGCGCAGGCGCTGCTCGCGAGCCGCAATGCATCGAGCGCCGAGGTCGCGATCCGCTGCGGATTCACCTCGCTGCAGTACA
TGTATGCGGTGTTCCGGCGCGAACTCGGCTGCACGCCGCGCGAATACCAGGAACGCGCGGTGTCCGCGCACTGA

Upstream 100 bases:

>100_bases
TCCTACAATCGCCGGACATCGAACCGTCGCGCGCCGCCCGCCGGACGCGCGCCCCAGGAGACAACGGCACGGCGCCAGCG
GCGCCGGCCCCGAGACCGAG

Downstream 100 bases:

>100_bases
CGCTCATCGTCTCGACGACCGATTACTCATGACCTTCGATACCGATTCTTCCCGCACCGCGTCCGACGTCGCCCGCACTC
CGTCCGAGCCGTGGGGTCCG

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MNRARSAPTPHRIALLFNANKVYDREIISGIGQYLHSTRVVWDLFLEDDFRCRLAGIERFDGDGIIADFDDPAVADALAG
SPLPIVAVGSSYEDPSHYPDGVPYIATDNPKLVSLAYTHLIGAGLPHFAMYSLPAAQENRWAQQRELAFDRLARADGLDA
PIYRGLPTTASGWNHAIEQLIGWLNALPKPVGVIAVTDARARHLLQACLIAGIAVPEQVAIIGIDNDPLTRTLTRIPLSS
VIQGTEEMGRTAAHLLHRMLRGARFPGQRILVPPVGINVLESTRHQPVASPHVMRARHFIRQYACQGIKTEQVADYVGVS
RSLLEEHFRRELQRTVHQEILRHKLEAAQALLASRNASSAEVAIRCGFTSLQYMYAVFRRELGCTPREYQERAVSAH

Sequences:

>Translated_397_residues
MNRARSAPTPHRIALLFNANKVYDREIISGIGQYLHSTRVVWDLFLEDDFRCRLAGIERFDGDGIIADFDDPAVADALAG
SPLPIVAVGSSYEDPSHYPDGVPYIATDNPKLVSLAYTHLIGAGLPHFAMYSLPAAQENRWAQQRELAFDRLARADGLDA
PIYRGLPTTASGWNHAIEQLIGWLNALPKPVGVIAVTDARARHLLQACLIAGIAVPEQVAIIGIDNDPLTRTLTRIPLSS
VIQGTEEMGRTAAHLLHRMLRGARFPGQRILVPPVGINVLESTRHQPVASPHVMRARHFIRQYACQGIKTEQVADYVGVS
RSLLEEHFRRELQRTVHQEILRHKLEAAQALLASRNASSAEVAIRCGFTSLQYMYAVFRRELGCTPREYQERAVSAH
>Mature_397_residues
MNRARSAPTPHRIALLFNANKVYDREIISGIGQYLHSTRVVWDLFLEDDFRCRLAGIERFDGDGIIADFDDPAVADALAG
SPLPIVAVGSSYEDPSHYPDGVPYIATDNPKLVSLAYTHLIGAGLPHFAMYSLPAAQENRWAQQRELAFDRLARADGLDA
PIYRGLPTTASGWNHAIEQLIGWLNALPKPVGVIAVTDARARHLLQACLIAGIAVPEQVAIIGIDNDPLTRTLTRIPLSS
VIQGTEEMGRTAAHLLHRMLRGARFPGQRILVPPVGINVLESTRHQPVASPHVMRARHFIRQYACQGIKTEQVADYVGVS
RSLLEEHFRRELQRTVHQEILRHKLEAAQALLASRNASSAEVAIRCGFTSLQYMYAVFRRELGCTPREYQERAVSAH

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=381, Percent_Identity=49.0813648293963, Blast_Score=379, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 44032; Mature: 44032

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRARSAPTPHRIALLFNANKVYDREIISGIGQYLHSTRVVWDLFLEDDFRCRLAGIERF
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEE
DGDGIIADFDDPAVADALAGSPLPIVAVGSSYEDPSHYPDGVPYIATDNPKLVSLAYTHL
CCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHH
IGAGLPHFAMYSLPAAQENRWAQQRELAFDRLARADGLDAPIYRGLPTTASGWNHAIEQL
HHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHH
IGWLNALPKPVGVIAVTDARARHLLQACLIAGIAVPEQVAIIGIDNDPLTRTLTRIPLSS
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCHHH
VIQGTEEMGRTAAHLLHRMLRGARFPGQRILVPPVGINVLESTRHQPVASPHVMRARHFI
HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHH
RQYACQGIKTEQVADYVGVSRSLLEEHFRRELQRTVHQEILRHKLEAAQALLASRNASSA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EVAIRCGFTSLQYMYAVFRRELGCTPREYQERAVSAH
EEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MNRARSAPTPHRIALLFNANKVYDREIISGIGQYLHSTRVVWDLFLEDDFRCRLAGIERF
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEE
DGDGIIADFDDPAVADALAGSPLPIVAVGSSYEDPSHYPDGVPYIATDNPKLVSLAYTHL
CCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHH
IGAGLPHFAMYSLPAAQENRWAQQRELAFDRLARADGLDAPIYRGLPTTASGWNHAIEQL
HHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHH
IGWLNALPKPVGVIAVTDARARHLLQACLIAGIAVPEQVAIIGIDNDPLTRTLTRIPLSS
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCHHH
VIQGTEEMGRTAAHLLHRMLRGARFPGQRILVPPVGINVLESTRHQPVASPHVMRARHFI
HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHH
RQYACQGIKTEQVADYVGVSRSLLEEHFRRELQRTVHQEILRHKLEAAQALLASRNASSA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EVAIRCGFTSLQYMYAVFRRELGCTPREYQERAVSAH
EEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]