Click here to switch to the map view.

The map label for this gene is pcaU [H]

Identifier: 189353040

GI number: 189353040

Start: 1207967

End: 1208737

Strand: Reverse

Name: pcaU [H]

Synonym: BMULJ_04274

Alternate gene names: 189353040

Gene position: 1208737-1207967 (Counterclockwise)

Preceding gene: 189353043

Following gene: 189353034

Centisome position: 48.87

GC content: 67.83

Gene sequence:

>771_bases
ATGAAAAAGCCCGAACTCGACCGACGCGACTGGATTGCCGGCCTCGAAAAAGGGCTGGCGATCCTCGAAGCGTTCGACAG
CCAGCATGCGCGCATGACGCCGACCCAGGCCGCCGCGCGCACGGGCCTGACGCGCACGGCCGCGCGGCGCTATCTGCTGA
CGCTCGAATCGCTCGGCTACGTCTATACCGACGGCAAGCTGTACGGTCTGACGCCGCGCGTGCTGCGCGTCGGCTGGTCG
TATTTCGATTCGGCGCGGCTGCCGCGCACCGTGCAGCCGTATCTGCAGCAACTGAGCGCGTCGCTGAACGAATCGGCCTA
CGTCAGCGTGCTCGACGAATGGGAGCTGGTGTTCATCGCGCGCAACGGCGTGTCGCGCGTGATGACGACGGGCTTCGTGC
TCGGCGCGCGCGTGCCGGCGCCGCTGACGTCGCCGGGCGTCGTGCTGCTCGCCCATCATCCGGACCGCGAAGCCGTGCGC
GCGTGGCTCGACCGCACCGAACTGCCGCCGTTCACGCCGCATACGATCACGAACAAGGCGCGTCTGCTCGAACAGGTCGA
TCGCGCGCGCGACGCCGGTTTTGCGGTGATCGAGCAGCAGTTGCAGGTCGGCGTGCGCGGGATCGCCGTGCCGCTGAAGA
ACCGTCACGGCGAAGTCGTCGCGGCGCTGAGCACGAACATGCCGATCGGCGCGGAAACGACCGAAGCGGCCGTGCGGCGC
GTGTTGCCGTTTCTGCAGGAAACCGCGCTCGCGATGCTGAACGTGCTGTAA

Upstream 100 bases:

>100_bases
ATTTTTGGTATCCGCCGGCCGGTCGCATCCTGCGGCAAATCTGCGCGATAATCGCCCAATTCCGCGCGATGACCGCGCAT
ACAATCACCACGCTCCGACG

Downstream 100 bases:

>100_bases
CGCACCGGATGCGGCGATGCGGCCGCGTCGAGCGCGTCAGCCGATCCGCCACCAGCGCGGCAGCAGGTTGCGCACTTCGC
GTCGTCGATAGCGGTCGTCG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKKPELDRRDWIAGLEKGLAILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGYVYTDGKLYGLTPRVLRVGWS
YFDSARLPRTVQPYLQQLSASLNESAYVSVLDEWELVFIARNGVSRVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVR
AWLDRTELPPFTPHTITNKARLLEQVDRARDAGFAVIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGAETTEAAVRR
VLPFLQETALAMLNVL

Sequences:

>Translated_256_residues
MKKPELDRRDWIAGLEKGLAILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGYVYTDGKLYGLTPRVLRVGWS
YFDSARLPRTVQPYLQQLSASLNESAYVSVLDEWELVFIARNGVSRVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVR
AWLDRTELPPFTPHTITNKARLLEQVDRARDAGFAVIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGAETTEAAVRR
VLPFLQETALAMLNVL
>Mature_256_residues
MKKPELDRRDWIAGLEKGLAILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGYVYTDGKLYGLTPRVLRVGWS
YFDSARLPRTVQPYLQQLSASLNESAYVSVLDEWELVFIARNGVSRVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVR
AWLDRTELPPFTPHTITNKARLLEQVDRARDAGFAVIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGAETTEAAVRR
VLPFLQETALAMLNVL

Specific function: Activates transcription of the pca operon [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=231, Percent_Identity=29.4372294372294, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786468, Length=244, Percent_Identity=26.6393442622951, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082359, Length=222, Percent_Identity=26.1261261261261, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786715, Length=216, Percent_Identity=26.3888888888889, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789999, Length=258, Percent_Identity=25.1937984496124, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012794
- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28349; Mature: 28349

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPELDRRDWIAGLEKGLAILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCE
VYTDGKLYGLTPRVLRVGWSYFDSARLPRTVQPYLQQLSASLNESAYVSVLDEWELVFIA
EEECCEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEE
RNGVSRVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVRAWLDRTELPPFTPHTITNKA
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHH
RLLEQVDRARDAGFAVIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGAETTEAAVRR
HHHHHHHHHHHCHHHHHHHHHHHCHHHEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHH
VLPFLQETALAMLNVL
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKPELDRRDWIAGLEKGLAILEAFDSQHARMTPTQAAARTGLTRTAARRYLLTLESLGY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCE
VYTDGKLYGLTPRVLRVGWSYFDSARLPRTVQPYLQQLSASLNESAYVSVLDEWELVFIA
EEECCEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEE
RNGVSRVMTTGFVLGARVPAPLTSPGVVLLAHHPDREAVRAWLDRTELPPFTPHTITNKA
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHH
RLLEQVDRARDAGFAVIEQQLQVGVRGIAVPLKNRHGEVVAALSTNMPIGAETTEAAVRR
HHHHHHHHHHHCHHHHHHHHHHHCHHHEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHH
VLPFLQETALAMLNVL
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9515921 [H]