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The map label for this gene is fimZ [C]

Identifier: 189352982

GI number: 189352982

Start: 1142519

End: 1143319

Strand: Reverse

Name: fimZ [C]

Synonym: BMULJ_04216

Alternate gene names: 189352982

Gene position: 1143319-1142519 (Counterclockwise)

Preceding gene: 189352985

Following gene: 189352980

Centisome position: 46.23

GC content: 67.17

Gene sequence:

>801_bases
ATGGACCGTCTGTTTTCCGAAATCGCGATGCATCAGGCGCTCGGCCGTACGATCGACCATCTCGGCCAGCCGCGCTTCTG
GCGTTTTCTCGTGCTGCTGCTCAACGAGATGGTGCCGTTCGACAACGCGCTCGCGACCGCGATCGGCCGCGACGGCGTGC
CGCTCGTGCTCGACGAATACGATGCGGGCGGCAGCGACAGCGCGTCGCCGGTGCCGCTCTACCTGAACGGGTTATATCTG
CTCGATCCGTTCCTGCAGGCCGCGCACGACGGCCTTGCCGACGGCTGCTACCGGCTCGAGGAAGTCGCGCCGGACCTGTT
CCGGCAGAGCGAGTATTTCCTCAGCTACTTTCGCGATGCAGTCGGCGACGACGAAATCCAGATCCTCGTGCGCCCGAACG
CCGACACGCTGCTGTCGCTGTCGCTCGGCGCGGCCGCGCGCTTCGACGTCGAGCCGCTCGGCAAGCTGACGGCCGCGATG
CCGTGGGTGCTTGCGACGATCCGGCAGCACTGGCGCCTGATCGGCGACACCGCGCGCGCGACGCGCGACGACGATCTCGG
CACGCGCGTCGAGCATGCGCTCGCGCGCTTCGGCGCCGGCGTGCTGACCGATCGCGAGATGGCGATCGCGCGGATGGTGC
TGCGCGGGAATTCGTCGAAGGCGATCGCGGAACGGCTCGCGATTTCACCGGAGACCGTGAAGGTGCATCGCCGCCATCTC
TACGCGAAGCTCGGCATCTCGTCGCAGCCGGAACTGTTTTCGCGGTTCATCGAGGCGTTGGGCGAAGACGCCGCCGGATA
A

Upstream 100 bases:

>100_bases
TTTGAACGCCCATACTCGGGCCGGTGAGTTGCGTGGCAGTCTAGGAAGCCAAATTCAGGACCGCTATTCCCCCTTCGTGT
TACGCCCTTCGGTAGTTGGC

Downstream 100 bases:

>100_bases
TCGCGTTGCAAGAAGGCCGAGTGCACGCGACTTGACTTGCATGGTCGACGCGACGCCGCACCGAACGATGTCGATGCACC
TGCCGCGTCTTGCATGCATG

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDRLFSEIAMHQALGRTIDHLGQPRFWRFLVLLLNEMVPFDNALATAIGRDGVPLVLDEYDAGGSDSASPVPLYLNGLYL
LDPFLQAAHDGLADGCYRLEEVAPDLFRQSEYFLSYFRDAVGDDEIQILVRPNADTLLSLSLGAAARFDVEPLGKLTAAM
PWVLATIRQHWRLIGDTARATRDDDLGTRVEHALARFGAGVLTDREMAIARMVLRGNSSKAIAERLAISPETVKVHRRHL
YAKLGISSQPELFSRFIEALGEDAAG

Sequences:

>Translated_266_residues
MDRLFSEIAMHQALGRTIDHLGQPRFWRFLVLLLNEMVPFDNALATAIGRDGVPLVLDEYDAGGSDSASPVPLYLNGLYL
LDPFLQAAHDGLADGCYRLEEVAPDLFRQSEYFLSYFRDAVGDDEIQILVRPNADTLLSLSLGAAARFDVEPLGKLTAAM
PWVLATIRQHWRLIGDTARATRDDDLGTRVEHALARFGAGVLTDREMAIARMVLRGNSSKAIAERLAISPETVKVHRRHL
YAKLGISSQPELFSRFIEALGEDAAG
>Mature_266_residues
MDRLFSEIAMHQALGRTIDHLGQPRFWRFLVLLLNEMVPFDNALATAIGRDGVPLVLDEYDAGGSDSASPVPLYLNGLYL
LDPFLQAAHDGLADGCYRLEEVAPDLFRQSEYFLSYFRDAVGDDEIQILVRPNADTLLSLSLGAAARFDVEPLGKLTAAM
PWVLATIRQHWRLIGDTARATRDDDLGTRVEHALARFGAGVLTDREMAIARMVLRGNSSKAIAERLAISPETVKVHRRHL
YAKLGISSQPELFSRFIEALGEDAAG

Specific function: Unknown

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 29404; Mature: 29404

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLFSEIAMHQALGRTIDHLGQPRFWRFLVLLLNEMVPFDNALATAIGRDGVPLVLDEY
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECC
DAGGSDSASPVPLYLNGLYLLDPFLQAAHDGLADGCYRLEEVAPDLFRQSEYFLSYFRDA
CCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGDDEIQILVRPNADTLLSLSLGAAARFDVEPLGKLTAAMPWVLATIRQHWRLIGDTARA
CCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TRDDDLGTRVEHALARFGAGVLTDREMAIARMVLRGNSSKAIAERLAISPETVKVHRRHL
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
YAKLGISSQPELFSRFIEALGEDAAG
HHHCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDRLFSEIAMHQALGRTIDHLGQPRFWRFLVLLLNEMVPFDNALATAIGRDGVPLVLDEY
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECC
DAGGSDSASPVPLYLNGLYLLDPFLQAAHDGLADGCYRLEEVAPDLFRQSEYFLSYFRDA
CCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGDDEIQILVRPNADTLLSLSLGAAARFDVEPLGKLTAAMPWVLATIRQHWRLIGDTARA
CCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TRDDDLGTRVEHALARFGAGVLTDREMAIARMVLRGNSSKAIAERLAISPETVKVHRRHL
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
YAKLGISSQPELFSRFIEALGEDAAG
HHHCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7789814 [H]