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The map label for this gene is yqhC [H]

Identifier: 189352740

GI number: 189352740

Start: 846201

End: 847172

Strand: Reverse

Name: yqhC [H]

Synonym: BMULJ_03972

Alternate gene names: 189352740

Gene position: 847172-846201 (Counterclockwise)

Preceding gene: 189352743

Following gene: 189352739

Centisome position: 34.25

GC content: 71.5

Gene sequence:

>972_bases
ATGAACGCCACGCAAGCTGACCGCCGCGGCGGCGAGCGCTCGCCGGATCGCCGGAACCGGATCGTCGCGCTGTCCGCCGC
GCTCGCGCCGCGCGAAGGCTACAACCTGACCGCGCTGCCGAGCGTGCGCATCCTGCGCTCCGACCGCGCGCTCGCGCGCA
CGCCGGTGCTGTACGACCCCGGCATCGTGATCGTCTGCCAGGGCCGCAAGCGCGGCTACTTCGGCGACGCGCTCTACCTC
TACGACGAGCGCCACTATCTGGCCGTCTCGGTGCCCGTGCCGTTCAGCATGGAAACCGACGCGACGCCGGCGCGGCCGCT
GCTCGCGCTGTATCTGCATCTCGATTTCGCGATGGCGGCCGAGCTGGCCGCGCAGATCGACCGCGCCGGCGGCACGCCGC
CCGTGCATGCGCCGCGCAGCATGATGTCGACGCCGATGGACGAGGCGATGCACACCTCGGTGCTGCGCCTGCTCGATGCG
CTGACGCGGCCGCTCGAGGCGGCCGTGCTCGGGCCGGGCCTGCTGCGCGAACTCTACTTTCGCGTGCTGACCGGCGCGCA
GGGGCCGTCGATGCGCGCGGCGCTCGCGATGCGCGGCCAGTTCGGCCGGATCGGCCGCGCGCTGCGTGCGATCCATGCCG
GCTACGCGCAGCCGCTCGACGTCGCGCAGCTCGCACGCGAAGCCGGCATGAGCGTGCCGAGCTTCCACAGTCACTTCAAG
GCCGTCACGCAGGTGTCGCCGATGCAGTACGTGAAGTCGACGCGGCTGCATCAGGCGCGGCTGCTGATGGTGCGACAGGG
CTTGACGGCGGAAGCGGCGAGCCACGCGGTCGGCTACGCGAGCCCGTCGCAGTTCAGCCGCGAGTTCAAGCGGCTGTTCG
GCGCGACGCCCGCGTCCGAAACGAAGCGCATGCGCGAAAGCTTCGCATTGCCGCCCGCGTTCGCCGATGCCGAGTACGTG
TCGTCGCACTGA

Upstream 100 bases:

>100_bases
TGCCATTGCAGTCTCTCCCGAAAATCGATTGGAGCCTGCATACTAGTGTCGATCGCGAAGCCGTTTAACGCGAATTCCGC
TGTTTTTCTTGCCTAAAACT

Downstream 100 bases:

>100_bases
CGCCCGCGAGCGACCGCGGCCGCGATACGCGCGGCGCGCCGGCATGGTCTAATGCCGATGCAAGCGGCCGCGACCGTCCG
TGCCCGACGCGCTGCGGCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNATQADRRGGERSPDRRNRIVALSAALAPREGYNLTALPSVRILRSDRALARTPVLYDPGIVIVCQGRKRGYFGDALYL
YDERHYLAVSVPVPFSMETDATPARPLLALYLHLDFAMAAELAAQIDRAGGTPPVHAPRSMMSTPMDEAMHTSVLRLLDA
LTRPLEAAVLGPGLLRELYFRVLTGAQGPSMRAALAMRGQFGRIGRALRAIHAGYAQPLDVAQLAREAGMSVPSFHSHFK
AVTQVSPMQYVKSTRLHQARLLMVRQGLTAEAASHAVGYASPSQFSREFKRLFGATPASETKRMRESFALPPAFADAEYV
SSH

Sequences:

>Translated_323_residues
MNATQADRRGGERSPDRRNRIVALSAALAPREGYNLTALPSVRILRSDRALARTPVLYDPGIVIVCQGRKRGYFGDALYL
YDERHYLAVSVPVPFSMETDATPARPLLALYLHLDFAMAAELAAQIDRAGGTPPVHAPRSMMSTPMDEAMHTSVLRLLDA
LTRPLEAAVLGPGLLRELYFRVLTGAQGPSMRAALAMRGQFGRIGRALRAIHAGYAQPLDVAQLAREAGMSVPSFHSHFK
AVTQVSPMQYVKSTRLHQARLLMVRQGLTAEAASHAVGYASPSQFSREFKRLFGATPASETKRMRESFALPPAFADAEYV
SSH
>Mature_323_residues
MNATQADRRGGERSPDRRNRIVALSAALAPREGYNLTALPSVRILRSDRALARTPVLYDPGIVIVCQGRKRGYFGDALYL
YDERHYLAVSVPVPFSMETDATPARPLLALYLHLDFAMAAELAAQIDRAGGTPPVHAPRSMMSTPMDEAMHTSVLRLLDA
LTRPLEAAVLGPGLLRELYFRVLTGAQGPSMRAALAMRGQFGRIGRALRAIHAGYAQPLDVAQLAREAGMSVPSFHSHFK
AVTQVSPMQYVKSTRLHQARLLMVRQGLTAEAASHAVGYASPSQFSREFKRLFGATPASETKRMRESFALPPAFADAEYV
SSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=267, Percent_Identity=43.8202247191011, Blast_Score=231, Evalue=5e-62,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35340; Mature: 35340

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATQADRRGGERSPDRRNRIVALSAALAPREGYNLTALPSVRILRSDRALARTPVLYDP
CCCCCCHHCCCCCCCCHHCCEEEEEEHHCCCCCCCEEECCCHHHHHCCCHHHHCCEEECC
GIVIVCQGRKRGYFGDALYLYDERHYLAVSVPVPFSMETDATPARPLLALYLHLDFAMAA
CEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ELAAQIDRAGGTPPVHAPRSMMSTPMDEAMHTSVLRLLDALTRPLEAAVLGPGLLRELYF
HHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RVLTGAQGPSMRAALAMRGQFGRIGRALRAIHAGYAQPLDVAQLAREAGMSVPSFHSHFK
HHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
AVTQVSPMQYVKSTRLHQARLLMVRQGLTAEAASHAVGYASPSQFSREFKRLFGATPASE
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
TKRMRESFALPPAFADAEYVSSH
HHHHHHHHCCCCCCCCCHHHCCC
>Mature Secondary Structure
MNATQADRRGGERSPDRRNRIVALSAALAPREGYNLTALPSVRILRSDRALARTPVLYDP
CCCCCCHHCCCCCCCCHHCCEEEEEEHHCCCCCCCEEECCCHHHHHCCCHHHHCCEEECC
GIVIVCQGRKRGYFGDALYLYDERHYLAVSVPVPFSMETDATPARPLLALYLHLDFAMAA
CEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ELAAQIDRAGGTPPVHAPRSMMSTPMDEAMHTSVLRLLDALTRPLEAAVLGPGLLRELYF
HHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RVLTGAQGPSMRAALAMRGQFGRIGRALRAIHAGYAQPLDVAQLAREAGMSVPSFHSHFK
HHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHH
AVTQVSPMQYVKSTRLHQARLLMVRQGLTAEAASHAVGYASPSQFSREFKRLFGATPASE
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
TKRMRESFALPPAFADAEYVSSH
HHHHHHHHCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]