Click here to switch to the map view.

The map label for this gene is nlpD [C]

Identifier: 189352610

GI number: 189352610

Start: 694246

End: 694983

Strand: Direct

Name: nlpD [C]

Synonym: BMULJ_03841

Alternate gene names: 189352610

Gene position: 694246-694983 (Clockwise)

Preceding gene: 189352608

Following gene: 189352612

Centisome position: 28.07

GC content: 72.09

Gene sequence:

>738_bases
TTGAGAAAAACGATTCCCATCCACGCTTCCGCGGTGCGCTGGCTGCCGCACGCCGCCTTCCTCGCGGCGGCCGTCGCGCT
CGGCGGCTGCACGATGACGCCGTGGACCGACACCTGGCAACCGGCACCGCGGGCCTCGACACCGGCGTCGATCGCGACGC
CCGGCGTGCTGGCCGGCTACTACCGCGTGAACCCGGGCGATACGCTCGCGAGCATCGCCGGCGCGTACGGGCAGCGCGTG
CAGGACGTCGCGAGCTGGAATCACATGGCCGCGACCGACGCGGTGACGCCCGGTCAGGTGCTGCGCGTCGCGCCGCCGGC
CGCCACCTCGATTTCGCCGCCGCCGTCCGCGGCCGCCGCGCAGTCCGGCACGCTCGCGTGGCCCGCGACCGGCGTCGTGA
CGACGCCGTTTACGTCCGGCAAGACACGCGGCATCGTGATCGCCGCATCGGGGCCCGACCATACGGTGCGCGCGGCCGCG
AACGGCCGCGTCGTCTATGCCGGGTCGGGCGTGAAGGCCTACGGGCCGCTCGTGATCCTGAAGCACGACAACGGGCTCAT
CACGGCCTACGGCCACAACGACAAGCTGCTCGTCAACGAAGGCGACGCCGTGCGCGTCGGGCAGCCGGTCGCCGAAATGG
GCACCGACGCGAGCGGCCGCGCGACCTTCGAGTTCGAAGTCCGGCAGAACGGCAAGGTCGTCGATCCGATGGGCTTTCTG
CCGCGCAACGGCGGCTGA

Upstream 100 bases:

>100_bases
GCGCGGTCGGATACTGGTTGGTTCGGCCCGTCGGCCGGACATCGCGCGTCGCGCGCCGGAGGGCGGCGGGCGGCGCGACG
ACGCAAATCCGGGAGGTACC

Downstream 100 bases:

>100_bases
GCGGCCGCCGCGTCGTGTGCGCCGCGCGGCGCACACGTGCGATTGCGCATCATCCGCTCTTCAGCGTCGCCGCGCCGGAC
TGGCGCGCGTGATTGCCGAC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MRKTIPIHASAVRWLPHAAFLAAAVALGGCTMTPWTDTWQPAPRASTPASIATPGVLAGYYRVNPGDTLASIAGAYGQRV
QDVASWNHMAATDAVTPGQVLRVAPPAATSISPPPSAAAAQSGTLAWPATGVVTTPFTSGKTRGIVIAASGPDHTVRAAA
NGRVVYAGSGVKAYGPLVILKHDNGLITAYGHNDKLLVNEGDAVRVGQPVAEMGTDASGRATFEFEVRQNGKVVDPMGFL
PRNGG

Sequences:

>Translated_245_residues
MRKTIPIHASAVRWLPHAAFLAAAVALGGCTMTPWTDTWQPAPRASTPASIATPGVLAGYYRVNPGDTLASIAGAYGQRV
QDVASWNHMAATDAVTPGQVLRVAPPAATSISPPPSAAAAQSGTLAWPATGVVTTPFTSGKTRGIVIAASGPDHTVRAAA
NGRVVYAGSGVKAYGPLVILKHDNGLITAYGHNDKLLVNEGDAVRVGQPVAEMGTDASGRATFEFEVRQNGKVVDPMGFL
PRNGG
>Mature_245_residues
MRKTIPIHASAVRWLPHAAFLAAAVALGGCTMTPWTDTWQPAPRASTPASIATPGVLAGYYRVNPGDTLASIAGAYGQRV
QDVASWNHMAATDAVTPGQVLRVAPPAATSISPPPSAAAAQSGTLAWPATGVVTTPFTSGKTRGIVIAASGPDHTVRAAA
NGRVVYAGSGVKAYGPLVILKHDNGLITAYGHNDKLLVNEGDAVRVGQPVAEMGTDASGRATFEFEVRQNGKVVDPMGFL
PRNGG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=249, Percent_Identity=31.3253012048193, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789099, Length=118, Percent_Identity=41.5254237288136, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082297, Length=126, Percent_Identity=36.5079365079365, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 25141; Mature: 25141

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTIPIHASAVRWLPHAAFLAAAVALGGCTMTPWTDTWQPAPRASTPASIATPGVLAGY
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
YRVNPGDTLASIAGAYGQRVQDVASWNHMAATDAVTPGQVLRVAPPAATSISPPPSAAAA
EEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCHHC
QSGTLAWPATGVVTTPFTSGKTRGIVIAASGPDHTVRAAANGRVVYAGSGVKAYGPLVIL
CCCCEECCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEE
KHDNGLITAYGHNDKLLVNEGDAVRVGQPVAEMGTDASGRATFEFEVRQNGKVVDPMGFL
ECCCCEEEEECCCCEEEEECCCEEEECCCHHHHCCCCCCEEEEEEEECCCCCEECCCCCC
PRNGG
CCCCC
>Mature Secondary Structure
MRKTIPIHASAVRWLPHAAFLAAAVALGGCTMTPWTDTWQPAPRASTPASIATPGVLAGY
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
YRVNPGDTLASIAGAYGQRVQDVASWNHMAATDAVTPGQVLRVAPPAATSISPPPSAAAA
EEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCHHC
QSGTLAWPATGVVTTPFTSGKTRGIVIAASGPDHTVRAAANGRVVYAGSGVKAYGPLVIL
CCCCEECCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEE
KHDNGLITAYGHNDKLLVNEGDAVRVGQPVAEMGTDASGRATFEFEVRQNGKVVDPMGFL
ECCCCEEEEECCCCEEEEECCCEEEECCCHHHHCCCCCCEEEEEEEECCCCCEECCCCCC
PRNGG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]