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The map label for this gene is ybiH [H]

Identifier: 189352602

GI number: 189352602

Start: 684088

End: 684939

Strand: Direct

Name: ybiH [H]

Synonym: BMULJ_03833

Alternate gene names: 189352602

Gene position: 684088-684939 (Clockwise)

Preceding gene: 189352597

Following gene: 189352605

Centisome position: 27.66

GC content: 70.19

Gene sequence:

>852_bases
ATGAGCGAAGCGAAGAAGCTGCGGCGTACGTCGACCGGCGGGTATGCGCGCGGCGACGAAACGCGTCAGCGGATCATCGA
GGCCGCGATCGAACTGTTCGGCGAGCGCGGATTCGCGGGCGCATCGACACGGGACATCGCGGCGAAGGCCGGCGTGAACG
CGCCCGCGCTGCAGTACTACTTCGAGAACAAGGAAGGCGTATACCGCGCGTGCGTGGAATCGATCGCCGAACTCGGCTGG
GCGGTGTTCGGGCCCGCCGTCGCGCAGGCGCGCGCGGCGCTCGATGCCGATGCGGACGCCGACACGCTGATCGACGCGTT
CGTCGACATCCTGACCGCGCTCGCGCAGCGGATGTTCACGGTGCCGAAGACGCTGAACCAGCGGATGTTCTTCGCGCGCG
AACAGAACGGCCAGGAGCCGGCGAGCGCGAGCGAGATCCTGCTGAAGCGCATGCGCAAGCCGTTGAACGACGTGGCCACC
GAACTGATCGCGCGGATTTCCGGAAGGCCCGTCGACGATCCCGTGACGCGCTTGCGCGCGATGAGCCTGTTCGGCCAGCT
GACGGTGTTTCATGTCGCGCAGCGCTCGGCGCTGCAACTGCTCGGGTGGGAGTCGTTCGATGCGCCGCGCGCGGCGCTGC
TCGGCGAGACGGTGGCCGACCAGACGCGTCTGCTCTTGCAGCAGTGGCATGCGCAGCGCGGCGCGGCGGACGCACTGCGC
GGCGCGCACGAGCGGCGCACGCGCACGCCGGCGAAGCGTGCGGGAAAGCGTGAGGCCGCTGGGCCGGCCGCCGCCGACGC
GCCGCGTGCATCGACGCGTGCGCGACGCGCGAAGAAGCCGGACGCGACGTAA

Upstream 100 bases:

>100_bases
CGTCGACATGTAGGATCCAATTTATTCCGAGCGGAAGAATTATTCCAGTTGATAAAAATGTGTCAAGTAGAATGTCGATC
GATCGAGTGACGAGGAAGGC

Downstream 100 bases:

>100_bases
CGCGCGATGCGCCGACGCGCGGCCGACGTGCTAGCGGGCCGCGCTATTGCGCCGGCTTGGGCGCCGGCGTCGACGAATCG
ACGGGCGGCTGTCCGGTCGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSEAKKLRRTSTGGYARGDETRQRIIEAAIELFGERGFAGASTRDIAAKAGVNAPALQYYFENKEGVYRACVESIAELGW
AVFGPAVAQARAALDADADADTLIDAFVDILTALAQRMFTVPKTLNQRMFFAREQNGQEPASASEILLKRMRKPLNDVAT
ELIARISGRPVDDPVTRLRAMSLFGQLTVFHVAQRSALQLLGWESFDAPRAALLGETVADQTRLLLQQWHAQRGAADALR
GAHERRTRTPAKRAGKREAAGPAAADAPRASTRARRAKKPDAT

Sequences:

>Translated_283_residues
MSEAKKLRRTSTGGYARGDETRQRIIEAAIELFGERGFAGASTRDIAAKAGVNAPALQYYFENKEGVYRACVESIAELGW
AVFGPAVAQARAALDADADADTLIDAFVDILTALAQRMFTVPKTLNQRMFFAREQNGQEPASASEILLKRMRKPLNDVAT
ELIARISGRPVDDPVTRLRAMSLFGQLTVFHVAQRSALQLLGWESFDAPRAALLGETVADQTRLLLQQWHAQRGAADALR
GAHERRTRTPAKRAGKREAAGPAAADAPRASTRARRAKKPDAT
>Mature_282_residues
SEAKKLRRTSTGGYARGDETRQRIIEAAIELFGERGFAGASTRDIAAKAGVNAPALQYYFENKEGVYRACVESIAELGWA
VFGPAVAQARAALDADADADTLIDAFVDILTALAQRMFTVPKTLNQRMFFAREQNGQEPASASEILLKRMRKPLNDVATE
LIARISGRPVDDPVTRLRAMSLFGQLTVFHVAQRSALQLLGWESFDAPRAALLGETVADQTRLLLQQWHAQRGAADALRG
AHERRTRTPAKRAGKREAAGPAAADAPRASTRARRAKKPDAT

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=216, Percent_Identity=30.5555555555556, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 30841; Mature: 30710

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAKKLRRTSTGGYARGDETRQRIIEAAIELFGERGFAGASTRDIAAKAGVNAPALQYY
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHH
FENKEGVYRACVESIAELGWAVFGPAVAQARAALDADADADTLIDAFVDILTALAQRMFT
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VPKTLNQRMFFAREQNGQEPASASEILLKRMRKPLNDVATELIARISGRPVDDPVTRLRA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
MSLFGQLTVFHVAQRSALQLLGWESFDAPRAALLGETVADQTRLLLQQWHAQRGAADALR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
GAHERRTRTPAKRAGKREAAGPAAADAPRASTRARRAKKPDAT
HHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SEAKKLRRTSTGGYARGDETRQRIIEAAIELFGERGFAGASTRDIAAKAGVNAPALQYY
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHH
FENKEGVYRACVESIAELGWAVFGPAVAQARAALDADADADTLIDAFVDILTALAQRMFT
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VPKTLNQRMFFAREQNGQEPASASEILLKRMRKPLNDVATELIARISGRPVDDPVTRLRA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
MSLFGQLTVFHVAQRSALQLLGWESFDAPRAALLGETVADQTRLLLQQWHAQRGAADALR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
GAHERRTRTPAKRAGKREAAGPAAADAPRASTRARRAKKPDAT
HHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]