Click here to switch to the map view.

The map label for this gene is pcaR [H]

Identifier: 189352014

GI number: 189352014

Start: 32512

End: 33438

Strand: Reverse

Name: pcaR [H]

Synonym: BMULJ_03231

Alternate gene names: 189352014

Gene position: 33438-32512 (Counterclockwise)

Preceding gene: 189352022

Following gene: 189352013

Centisome position: 1.35

GC content: 67.85

Gene sequence:

>927_bases
ATGGACGCGCTCGATCTGAACCTCATTCCCTATCTCGTCGCGCTCGACGACACGCGCAACGTGAGCCGCGCGGGCGAACT
GCTCGGCGTCAGCCAGCCGCGCGTGAGCACGGCGCTCGGGCGCCTGCGCGCGTACTTCGGCGATCCGCTGTTCGTGCGCA
CGTCGCGCGGGATGGAACCGACGCCGCGTGCGCTCGCGCTGCTGCCCGCCGCGCGCGACGCGCTCGCGCAGATCGAGCGC
GGGCTCGTCGCGCCGCACGACTTCGATCCGGCCGCGAGCACGCATACGTTTTCGATCGCGCTGTCGGACGTCGGCGAGAT
CGTGTTTCTGCCGAAGCTGCTGCAGGCGTTCGCGCAATGCGCGCCGCATGCGAACCTGCGCTCGGTGTCGCTGCCGCACG
ATGAAGTCGGACGCGGCCTCGAGGCCGGCTCGATCGATCTCGCGGTCGGCTATTTCCCCGATCTCGACGGCAACAACTTC
TTCCAGCAGCGTCTGTTCACGCATCGCTTCGTGTGTCTGATGCGGCGCGGCCACCCGCTCGAGCAGGCGCGGCCGTTCAC
CGTCGAGCAGTTCCTCGAAAGCGGGCATGCGGTCGTGCGCGCCGAGGGACGCAGCCAGGAAGTGCTCGAGAAATATCTCG
CGAAGCAGCGGATGCAGCGCCGCGCGGTGCTCGAGACGCCGCACTTCATGAGTCTGCCGTTCATCCTGAGCCGTACCGAT
CTGATCGCGACGGTGCCGCACGCGATCGGTTACGCCTATGCGGCCGAGCACGCGTTCATCGTGCCCGTCGAGCCGCCGCT
GCCGTTGCCGCGCTTCGACCTGAAACAGCACTGGCATCGCAAATTCCACAACGATCCGCGCACGGCGTGGCTGCGCGGCG
TCGTCGCGTCGCTGTTCAACGACGAGCAGGACGAGTGGCCGAAGTGA

Upstream 100 bases:

>100_bases
ACATTGGTTCGATTGGTGAACGCATTTCAGCGCTTTCCCGACTATGCGGCAACGCGATTCCGGAGATAACTTCTATCCGT
TTTCAAGATATTGGCCGGCG

Downstream 100 bases:

>100_bases
GCGCCGGGCCGCACGCACGAAGCGCGAAAGCATGAAACAATGCCCGGATACCGCGCCGCCGCAAACGGCGCCTTCGATGG
AGCAACGCTATGGGAAAAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDALDLNLIPYLVALDDTRNVSRAGELLGVSQPRVSTALGRLRAYFGDPLFVRTSRGMEPTPRALALLPAARDALAQIER
GLVAPHDFDPAASTHTFSIALSDVGEIVFLPKLLQAFAQCAPHANLRSVSLPHDEVGRGLEAGSIDLAVGYFPDLDGNNF
FQQRLFTHRFVCLMRRGHPLEQARPFTVEQFLESGHAVVRAEGRSQEVLEKYLAKQRMQRRAVLETPHFMSLPFILSRTD
LIATVPHAIGYAYAAEHAFIVPVEPPLPLPRFDLKQHWHRKFHNDPRTAWLRGVVASLFNDEQDEWPK

Sequences:

>Translated_308_residues
MDALDLNLIPYLVALDDTRNVSRAGELLGVSQPRVSTALGRLRAYFGDPLFVRTSRGMEPTPRALALLPAARDALAQIER
GLVAPHDFDPAASTHTFSIALSDVGEIVFLPKLLQAFAQCAPHANLRSVSLPHDEVGRGLEAGSIDLAVGYFPDLDGNNF
FQQRLFTHRFVCLMRRGHPLEQARPFTVEQFLESGHAVVRAEGRSQEVLEKYLAKQRMQRRAVLETPHFMSLPFILSRTD
LIATVPHAIGYAYAAEHAFIVPVEPPLPLPRFDLKQHWHRKFHNDPRTAWLRGVVASLFNDEQDEWPK
>Mature_308_residues
MDALDLNLIPYLVALDDTRNVSRAGELLGVSQPRVSTALGRLRAYFGDPLFVRTSRGMEPTPRALALLPAARDALAQIER
GLVAPHDFDPAASTHTFSIALSDVGEIVFLPKLLQAFAQCAPHANLRSVSLPHDEVGRGLEAGSIDLAVGYFPDLDGNNF
FQQRLFTHRFVCLMRRGHPLEQARPFTVEQFLESGHAVVRAEGRSQEVLEKYLAKQRMQRRAVLETPHFMSLPFILSRTD
LIATVPHAIGYAYAAEHAFIVPVEPPLPLPRFDLKQHWHRKFHNDPRTAWLRGVVASLFNDEQDEWPK

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=302, Percent_Identity=26.4900662251656, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790147, Length=313, Percent_Identity=24.9201277955272, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34564; Mature: 34564

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALDLNLIPYLVALDDTRNVSRAGELLGVSQPRVSTALGRLRAYFGDPLFVRTSRGMEP
CCCCCCCHHEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
TPRALALLPAARDALAQIERGLVAPHDFDPAASTHTFSIALSDVGEIVFLPKLLQAFAQC
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
APHANLRSVSLPHDEVGRGLEAGSIDLAVGYFPDLDGNNFFQQRLFTHRFVCLMRRGHPL
CCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
EQARPFTVEQFLESGHAVVRAEGRSQEVLEKYLAKQRMQRRAVLETPHFMSLPFILSRTD
HHCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LIATVPHAIGYAYAAEHAFIVPVEPPLPLPRFDLKQHWHRKFHNDPRTAWLRGVVASLFN
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC
DEQDEWPK
CCCCCCCC
>Mature Secondary Structure
MDALDLNLIPYLVALDDTRNVSRAGELLGVSQPRVSTALGRLRAYFGDPLFVRTSRGMEP
CCCCCCCHHEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
TPRALALLPAARDALAQIERGLVAPHDFDPAASTHTFSIALSDVGEIVFLPKLLQAFAQC
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
APHANLRSVSLPHDEVGRGLEAGSIDLAVGYFPDLDGNNFFQQRLFTHRFVCLMRRGHPL
CCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
EQARPFTVEQFLESGHAVVRAEGRSQEVLEKYLAKQRMQRRAVLETPHFMSLPFILSRTD
HHCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LIATVPHAIGYAYAAEHAFIVPVEPPLPLPRFDLKQHWHRKFHNDPRTAWLRGVVASLFN
HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC
DEQDEWPK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]