Click here to switch to the map view.

The map label for this gene is traU [H]

Identifier: 189184731

GI number: 189184731

Start: 1854623

End: 1855600

Strand: Direct

Name: traU [H]

Synonym: OTT_1824

Alternate gene names: 189184731

Gene position: 1854623-1855600 (Clockwise)

Preceding gene: 189184730

Following gene: 189184732

Centisome position: 92.32

GC content: 39.06

Gene sequence:

>978_bases
GTGAAGGAACTGGTAATTTTGTTTGCGATAGTAATGTCTATAACAGCTAATAACTGTTATGCAGCTGCTGGGTGTGTTGG
AAGATTTGTAAATCCTATAACAGATGTGTGTTGGAAGTGCTTGTTTCCAATTACTATAGCTGGATTTAAGGTAGTGAGTA
GTTCAATGCCAGATACTAATGCTTCTGGTAGACTTATATGCCTTTGTCCAAAACCAGGGATTCCAATACCTGTACCTGGT
ATTCCTGTTGGATTTTGGGAGCCAGTACGCCTTGTAGACGTTACAAAGTCACCAATGTGTATGGTAAGTCTTGGAGGTTT
GTCATTTGGAAGCGCTACTCAAAAAGGCATGAAAGATGAGGCTGAAGGAAGTGCTTTTTACCACATTCATTGGTATGTCT
ACCCAGTGATTTATTGGTTAGAGATTTTGCTTGATTTTATTTGTCTGGAAATGGCTGCAGTCGATATAGCATATTTAACA
GAGTTTGATCCATTATGGAGTGACGATGCTAAATCTGCGATTTTAAATCCAGAAACGTTGTTGTTTCAAAATGTAGCTGC
TTATCAAGCATGTATAGCTGATTGCATGAGTTGTAGCGCTGGTTTATTAGCAAGTGATTATGCTTTTTGGTGCGCTGGAT
GCCAAGGAATGCTTTACCCTTTTACTGGAACAGCTGCAGCGCATAATGGTGGAGTTGGGACGTCTGTATTAATGGTAAGT
AAGTTTATGGCTAAGATGCATAGGCAACTGATGTTATGGGGATATTATGGTTATAAAGGGCTATGTGGTAAGTATCCTAT
GCCAATTATGAAAAAAAGTCAGTATCGACTACAAATGACTTATCCAATTCCAGAAACAAAATCTTGCAAGAGCATAGGTC
AAACAGAAGCAACATGGCAAGCCGGCAGAGAATTTCCAGTTAATGGTGAAGATTTTGGTTACTTGATTTGGCGAAAAAGA
GATTGTTGTTTGCTTTGA

Upstream 100 bases:

>100_bases
TGCATATTTAGTGCCAGGTGTCAGAGATATAGAAAATACTGCTAGCAAATTTCGAAAATATAAAAAAAAGGAAATATACA
TGATCAAGAAAAGCTAGTAA

Downstream 100 bases:

>100_bases
TTTATAAAGCTTGGAGAGGAATATGGTTATACGAGTAATGATGTTGATGGTTTTATTATTTGTTAATAATGCTAATGCTT
TTTTTTTGAACCAGCAAAAA

Product: putative conjugative transfer protein TraU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKELVILFAIVMSITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNASGRLICLCPKPGIPIPVPG
IPVGFWEPVRLVDVTKSPMCMVSLGGLSFGSATQKGMKDEAEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLT
EFDPLWSDDAKSAILNPETLLFQNVAAYQACIADCMSCSAGLLASDYAFWCAGCQGMLYPFTGTAAAHNGGVGTSVLMVS
KFMAKMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEATWQAGREFPVNGEDFGYLIWRKR
DCCLL

Sequences:

>Translated_325_residues
MKELVILFAIVMSITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNASGRLICLCPKPGIPIPVPG
IPVGFWEPVRLVDVTKSPMCMVSLGGLSFGSATQKGMKDEAEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLT
EFDPLWSDDAKSAILNPETLLFQNVAAYQACIADCMSCSAGLLASDYAFWCAGCQGMLYPFTGTAAAHNGGVGTSVLMVS
KFMAKMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEATWQAGREFPVNGEDFGYLIWRKR
DCCLL
>Mature_325_residues
MKELVILFAIVMSITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTNASGRLICLCPKPGIPIPVPG
IPVGFWEPVRLVDVTKSPMCMVSLGGLSFGSATQKGMKDEAEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLT
EFDPLWSDDAKSAILNPETLLFQNVAAYQACIADCMSCSAGLLASDYAFWCAGCQGMLYPFTGTAAAHNGGVGTSVLMVS
KFMAKMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEATWQAGREFPVNGEDFGYLIWRKR
DCCLL

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 35882; Mature: 35882

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELVILFAIVMSITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTN
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ASGRLICLCPKPGIPIPVPGIPVGFWEPVRLVDVTKSPMCMVSLGGLSFGSATQKGMKDE
CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHCCCCC
AEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETL
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHH
LFQNVAAYQACIADCMSCSAGLLASDYAFWCAGCQGMLYPFTGTAAAHNGGVGTSVLMVS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHH
KFMAKMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEATWQ
HHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCHHHHH
AGREFPVNGEDFGYLIWRKRDCCLL
CCCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MKELVILFAIVMSITANNCYAAAGCVGRFVNPITDVCWKCLFPITIAGFKVVSSSMPDTN
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ASGRLICLCPKPGIPIPVPGIPVGFWEPVRLVDVTKSPMCMVSLGGLSFGSATQKGMKDE
CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHCCCCC
AEGSAFYHIHWYVYPVIYWLEILLDFICLEMAAVDIAYLTEFDPLWSDDAKSAILNPETL
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHH
LFQNVAAYQACIADCMSCSAGLLASDYAFWCAGCQGMLYPFTGTAAAHNGGVGTSVLMVS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHH
KFMAKMHRQLMLWGYYGYKGLCGKYPMPIMKKSQYRLQMTYPIPETKSCKSIGQTEATWQ
HHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCHHHHH
AGREFPVNGEDFGYLIWRKRDCCLL
CCCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]