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The map label for this gene is rci [H]

Identifier: 189184658

GI number: 189184658

Start: 1777438

End: 1778115

Strand: Direct

Name: rci [H]

Synonym: OTT_1751

Alternate gene names: 189184658

Gene position: 1777438-1778115 (Clockwise)

Preceding gene: 189184657

Following gene: 189184659

Centisome position: 88.47

GC content: 34.96

Gene sequence:

>678_bases
TTGCTAGCAACCTTACGCACTATGTTTAATAAGGCAATAAAATGGGGATTAATAGAAAACAATCCTACTCTAGGAATAGA
GCAGCATAAACTGCAAGCAAGAGAGAGACGTCTAAGTTACGATGAAATGGGTAGATTTTTACACGTATTATGTGGAGAAA
CAACTCCATTGATAAGAGATTTTGCATTACTAGCGTTATATACTGGAGCTAGAAAAAGTAATGTATTAGAGATGGAATGG
GACAATATAGATTTTGAAAGAAAAATATGGCATATACCAAAAACTAAGAACGGAAAGGCGCAAAATATACCATTAACAGA
TGAGGCAATGGAAATATTGCAAGCAAGGAAATTCACATCTGAAAGTAAATGGGTACTACCAAGTACTACTAGCGCAAGCG
GACACTTAGAGCGGCCAAATAACTCATGGCATAGGGTTTGTAAAAAGGCTGGCATAAAAAATTTAAGGATACACGATCTA
AGAAGGACGTTTGCAAGTTGTATGGGAGATGTAGGTGCAAGTCAGAGGACAATTAGTATAGCATTGAATCATATTAGTCC
AGAATCAACAATTAGTTATACTATACCTTGCCTGAAGTTAGTACAAGAGTATATGTCTAAGGCTACACAAATAATTAATG
GATGTGCTAGAAGTTATAATATTTATAATATTATCTGA

Upstream 100 bases:

>100_bases
ACTGTTATTTTTAAAAAAGATAAGAGAGATTAAAAGTAATGATATTGAACCAATATTTAATGATATCAGCCAAGATGGAA
AATATGCGACAGCAAATCTA

Downstream 100 bases:

>100_bases
CTAATATAAAAGTTGTGGTAAGAATAGTGCAACTTCATGTCGCACATGCATGTATGTAAACTAATTATTGCAGGTAAAAT
CTGTGTTTGAAGATGTTTAG

Product: putative integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLHVLCGETTPLIRDFALLALYTGARKSNVLEMEW
DNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDL
RRTFASCMGDVGASQRTISIALNHISPESTISYTIPCLKLVQEYMSKATQIINGCARSYNIYNII

Sequences:

>Translated_225_residues
MLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLHVLCGETTPLIRDFALLALYTGARKSNVLEMEW
DNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDL
RRTFASCMGDVGASQRTISIALNHISPESTISYTIPCLKLVQEYMSKATQIINGCARSYNIYNII
>Mature_225_residues
MLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLHVLCGETTPLIRDFALLALYTGARKSNVLEMEW
DNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDL
RRTFASCMGDVGASQRTISIALNHISPESTISYTIPCLKLVQEYMSKATQIINGCARSYNIYNII

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=185, Percent_Identity=30.2702702702703, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 25748; Mature: 25748

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLHVLCGETTPLIRD
CCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
FALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTS
HHHHHHHHCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC
ESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISI
CCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
ALNHISPESTISYTIPCLKLVQEYMSKATQIINGCARSYNIYNII
EEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERRLSYDEMGRFLHVLCGETTPLIRD
CCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
FALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTS
HHHHHHHHCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC
ESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISI
CCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
ALNHISPESTISYTIPCLKLVQEYMSKATQIINGCARSYNIYNII
EEECCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]