| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184238
Identifier: 189184238
GI number: 189184238
Start: 1354192
End: 1356669
Strand: Direct
Name: 189184238
Synonym: OTT_1331
Alternate gene names: NA
Gene position: 1354192-1356669 (Clockwise)
Preceding gene: 189184235
Following gene: 189184239
Centisome position: 67.41
GC content: 33.9
Gene sequence:
>2478_bases ATGATTTTTGTCAACCTTGATTGGAAAAATAGTAAATTTGAGCTGCAGGATCGTTTGATAATTGCTGGCCATAAAGAAGC TGAAAATATTAATCAACACATCAGAAATTACATGAAGGAAAATGATGTTCTGAAAGGTACAGAATACAGCATTTTAATTT CAGGAGTCGAATCAAAAAAATATGCTAACTACATGGCTGGAGACCGAATTGTATTTCAAACAAACGATAAGGATTTACAA ATACAAAACAGTGAATTTGCAACTCTAGTATCAATTGATGAAAATAAGTTTGTAGCTAAGACAGATACAGGAAACGAGGT AAGCTTTGATTTGAATAAAATAAGCTTTAAACATGGATATGCTACAACAGTTTGTAACCCACAAACAGCTGTCAAAAAAG ATGTATATGTTCTTCATAATAATGGTGTAGGAATAGAAAGTTCTAACATAAGCATGATAGGGAATGCAGAGCAAGTACGG CTGTACTACAATGTGCAAGCTACAAAAAATGTTGCTAACCTAATAGAGCAGCTTAGCACAGCTAAGACAGACTCTATCAA TTCAAAAGAGGAGAATAATGATGTTCAAGCAAATGAAGTAAGGCAATATCAATCTGCTCAAAACTATAGAAAAAACGATT ATTATTCAAATAGCGAGGAAGACCTACAAAAATTGAGGGATGCAATAGCTTATAGAGCTGACACTATAGCTTGTGATCTT CTTGGAGATCCAAATAAGCGCCTATCTACATACGGAAAAATACGTTGGGGAGACACTGGCAAAATACAAGTAACCACCGA GGGCAAGTACGCTGGAAAATGGTATGACTTTAGTACAGGACAAAAGGGTGATTTATTATCCCTGGTTCAAAGAGAAAGAG TATGCAGCTTTTTTGAGGCAAGGGAATATTTGAAAAGTATGGTTGGAATGTCTAATATTAGTCAACGGTATCAGAGACCG CCTAAGACTGACGATTCTCAACAATACACTCAACAATCTGAAAGTGTTAAAATCGCAAAAGTTCAAAACTTGTATGAACG ATCAAGCAGAATACATGGTTATGAGATAGATACGAGCCCAAGCGCAGAAGTTGAAATAGTAAAAAAGTATCTTGAAAATC GTGGTATTACTTTTGACAAAAGCACCGCAAGTTCAGACTTAAAAGCAAGTATACTGTTTGATACTCAAACTAGAGAAAAT TATCCAGCATTTACAGCATTTGCAAGAAATTCAAAAGGAGAAATTACCGGAGTACAGGCCGTATATCTAAATTCGGCAGG AGATAAGGCGAATATTTCAATTAACAGAAGATCTTTCGGTAAAATCAGAGGATCGTTCATAACAATCGCAAAGCGAAATG CGAATGACCCTAATATAACAATTATAGCAGAAGGCGCTGAAACAGCATTGAGCTTGCAGCAATCAGGCATTGAAGGTAAT ATCATTGCTAGTGCAGGAATTTCGAATTTGACAAATTATTCACCATTTCCTGGTGAAAAAATCATCATTGCAGCAGATAA TGATAGCAAAAATCCTATAACTAATAATACTGTAATTAAAGCTGCAAAAACGTTAGAAATGAAGGGAGCGATAACTTGTA TAGTCAAACCACCAGAAAATGGTGATTTTAATAATCTGCTGCAAACTTGTGGAGACCAGTCAATTAGAGACATTATAGAA CCTGAAATTACTAAACTGACTAAGGCAGTTGAAACAACCAAACTTACTCAAACAGAAAATAATAGTATAGCAAAACAAAA TGATATTACTAATGTTAAAGAATTGTATAATAAATCGTCATCTCTATACTACTTTAAACAAGAAGAGGAAGCTAAGGTGG AAACGATAGTAGTAAACAAATTTTTAGAAAACCATACAGGAATTTATAGTGCAAAAATCTTTAACAATTCTAATTTAAGG GCAAATATGGTTTTTGATGAAGAGACTCAAAAATCCTGGCCTGCACTCACTATTTTTGTTAAAAATGAAGCAGGTGAAAT TACTGGAGCTAAGATATTAACTCTGAATTCAAAAACATGTAATAAAGCTGATATTCCAGAAAAATCTGTTGGTACAATTA GTGGATCATTTGCTGAAATTGCTCAACAAAATCCAAAATACTCACCTGTAATAATCATTACAAAGGATATTGAAACAGCG TTAACCATTCAGCAAGCTAGAGTCGAAGGCAAAATCTTATGTGCAATTGAAGCCGAAAATTTGCAAAACTATAATCCTGG CCCAAAAGAAAAGATCATTCTAGCAGTTAAAAATGACGTAAATACTGAAAAAGCTGAAAAAGTTCTAGAGGATAAGGAAG CAGTAGTCTGCACAGTCAAAAATGACTTCAATAATGTATTGAAAACTCAAGGATTATATGCTGTTAGAAATATTATCAGC CCTGAAATAAGAAAACTTAATGAAAAAATTGAATCAATACAAACTAATATACAACCAGGATTATGTCCGAAACACTAG
Upstream 100 bases:
>100_bases TACATAAATTGTAACTCATATGTAATAATATGATCTATAGGTAAAATTGGTCTTCTAAGGCAGATAGTATAAGTATGAAG ATTTATATAGGTTTGGCATA
Downstream 100 bases:
>100_bases GCAGAGTATGACACAGCATTTTTTATTAAAAAAACTATAGAGTGAAAAAATATGACAAAACAATTAAAGCATGATTCATT GGCAAAGACAATCATGAGTG
Product: putative conjugative transfer protein TraI
Products: NA
Alternate protein names: Conjugative Transfer Protein TraA; Conjugal Transfer Protein TraA; MobA/MobL Family Protein; Conjugative Transfer Relaxase Protein TraI; Protein TraI; ATP-Dependent ExoDNAse Alpha Subunit; DNA Helicase
Number of amino acids: Translated: 825; Mature: 825
Protein sequence:
>825_residues MIFVNLDWKNSKFELQDRLIIAGHKEAENINQHIRNYMKENDVLKGTEYSILISGVESKKYANYMAGDRIVFQTNDKDLQ IQNSEFATLVSIDENKFVAKTDTGNEVSFDLNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVR LYYNVQATKNVANLIEQLSTAKTDSINSKEENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDL LGDPNKRLSTYGKIRWGDTGKIQVTTEGKYAGKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRP PKTDDSQQYTQQSESVKIAKVQNLYERSSRIHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTREN YPAFTAFARNSKGEITGVQAVYLNSAGDKANISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGN IIASAGISNLTNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQTCGDQSIRDIIE PEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLR ANMVFDEETQKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETA LTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIIS PEIRKLNEKIESIQTNIQPGLCPKH
Sequences:
>Translated_825_residues MIFVNLDWKNSKFELQDRLIIAGHKEAENINQHIRNYMKENDVLKGTEYSILISGVESKKYANYMAGDRIVFQTNDKDLQ IQNSEFATLVSIDENKFVAKTDTGNEVSFDLNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVR LYYNVQATKNVANLIEQLSTAKTDSINSKEENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDL LGDPNKRLSTYGKIRWGDTGKIQVTTEGKYAGKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRP PKTDDSQQYTQQSESVKIAKVQNLYERSSRIHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTREN YPAFTAFARNSKGEITGVQAVYLNSAGDKANISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGN IIASAGISNLTNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQTCGDQSIRDIIE PEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLR ANMVFDEETQKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETA LTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIIS PEIRKLNEKIESIQTNIQPGLCPKH >Mature_825_residues MIFVNLDWKNSKFELQDRLIIAGHKEAENINQHIRNYMKENDVLKGTEYSILISGVESKKYANYMAGDRIVFQTNDKDLQ IQNSEFATLVSIDENKFVAKTDTGNEVSFDLNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVR LYYNVQATKNVANLIEQLSTAKTDSINSKEENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDL LGDPNKRLSTYGKIRWGDTGKIQVTTEGKYAGKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRP PKTDDSQQYTQQSESVKIAKVQNLYERSSRIHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTREN YPAFTAFARNSKGEITGVQAVYLNSAGDKANISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGN IIASAGISNLTNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQTCGDQSIRDIIE PEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLR ANMVFDEETQKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETA LTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIIS PEIRKLNEKIESIQTNIQPGLCPKH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92255; Mature: 92255
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFVNLDWKNSKFELQDRLIIAGHKEAENINQHIRNYMKENDVLKGTEYSILISGVESKK CEEEEECCCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHH YANYMAGDRIVFQTNDKDLQIQNSEFATLVSIDENKFVAKTDTGNEVSFDLNKISFKHGY HHHHCCCCEEEEEECCCCEEEECCCEEEEEEECCCEEEEECCCCCEEEEEEEEEEECCCC ATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVRLYYNVQATKNVANLIEQLST EEEECCCCHHHCCCEEEEECCCCCEECCCEEEECCCEEEEEEEEEEHHHHHHHHHHHHHH AKTDSINSKEENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDL CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEE LGDPNKRLSTYGKIRWGDTGKIQVTTEGKYAGKWYDFSTGQKGDLLSLVQRERVCSFFEA CCCCCHHHHCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH REYLKSMVGMSNISQRYQRPPKTDDSQQYTQQSESVKIAKVQNLYERSSRIHGYEIDTSP HHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHCCEEHHHHHHHHHHHCCCCCEECCCCC SAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNSKGEITGVQA CCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEE VYLNSAGDKANISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGN EEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCCE IIASAGISNLTNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPEN EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHEEHHHHEEECCEEEEEEECCCC GDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSS CCHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHCCCC SLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFV CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEE KNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETA ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHH LTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVK HHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEEC NDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH CHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MIFVNLDWKNSKFELQDRLIIAGHKEAENINQHIRNYMKENDVLKGTEYSILISGVESKK CEEEEECCCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHH YANYMAGDRIVFQTNDKDLQIQNSEFATLVSIDENKFVAKTDTGNEVSFDLNKISFKHGY HHHHCCCCEEEEEECCCCEEEECCCEEEEEEECCCEEEEECCCCCEEEEEEEEEEECCCC ATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVRLYYNVQATKNVANLIEQLST EEEECCCCHHHCCCEEEEECCCCCEECCCEEEECCCEEEEEEEEEEHHHHHHHHHHHHHH AKTDSINSKEENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDL CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEE LGDPNKRLSTYGKIRWGDTGKIQVTTEGKYAGKWYDFSTGQKGDLLSLVQRERVCSFFEA CCCCCHHHHCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH REYLKSMVGMSNISQRYQRPPKTDDSQQYTQQSESVKIAKVQNLYERSSRIHGYEIDTSP HHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHCCEEHHHHHHHHHHHCCCCCEECCCCC SAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNSKGEITGVQA CCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEE VYLNSAGDKANISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGN EEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCCE IIASAGISNLTNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPEN EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHEEHHHHEEECCEEEEEEECCCC GDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSS CCHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHCCCC SLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFV CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEE KNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETA ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHH LTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVK HHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEEC NDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH CHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA