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The map label for this gene is traC [H]

Identifier: 189184171

GI number: 189184171

Start: 1291020

End: 1291601

Strand: Direct

Name: traC [H]

Synonym: OTT_1264

Alternate gene names: 189184171

Gene position: 1291020-1291601 (Clockwise)

Preceding gene: 189184169

Following gene: 189184172

Centisome position: 64.26

GC content: 36.08

Gene sequence:

>582_bases
TTGCTTTGGAATGTTTTTGTTCTTGATTACGGAAGATCATTTAAGCGTACATGCTTGATTCTAGGCGGTAGCTACATAAA
ATTTGACATGAAAAATCCTGTATCAATTAATCCATTTTCAGAGGTGCCAGAGGATGATAGTGCAAAATCCATAGAGGCTA
GATCAGATTTTTTATCTAACTTTCCATCCATTTTAGCTACTATGGCTGCTCCACAGTATGGAACAAGCGATTTACAACAA
CCAATGCTACAGAGGGCTTTGATATCAGTCTGGCAAAAAAATGGAGCTAAAGCTGAAATCACGGATATTGCAGACTGGTT
ATCAAATAGAGAAGAATCATATGCTAAAGAGCTTGGAAATATGCTCTTTCCTTTTACTAAAGATGGTCAACATGGAAGAT
TTTTTAGTGGTAAGGCGCAATTATCCTTGAATTCAGACATAGTAGTGATTGAAACAGATCATCTACGCTCTGTACCAGAG
CTGTTAGCTGTGATTGTACAGATTATGATTGTTCATATTAATCAAACAATAGTTAAGGGAGATAGAAGTAGACCTTTTTT
AATTATGATCGATGAAGCCTGA

Upstream 100 bases:

>100_bases
TTACAAGCGAAGTCCTAATTACCTTTTGTTATTGACTTGTGTTAAAGAGAATGGAATAAAAAAATGAGTATTAGAGTTTT
GAGATCTATCATAGTGTTTA

Downstream 100 bases:

>100_bases
AAGCTATTAGCTGGAAAGCGTTCAGGAGAGTTTATTGAAGAAGCAGGTCGAATAGCTCGAAAATATAATGGATCGATTGC
TTTAGCTACTCAGCAACTCA

Product: putative conjugative transfer protein TraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MLWNVFVLDYGRSFKRTCLILGGSYIKFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQ
PMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPE
LLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA

Sequences:

>Translated_193_residues
MLWNVFVLDYGRSFKRTCLILGGSYIKFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQ
PMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPE
LLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA
>Mature_193_residues
MLWNVFVLDYGRSFKRTCLILGGSYIKFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSNFPSILATMAAPQYGTSDLQQ
PMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGNMLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPE
LLAVIVQIMIVHINQTIVKGDRSRPFLIMIDEA

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 21730; Mature: 21730

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWNVFVLDYGRSFKRTCLILGGSYIKFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN
CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
FPSILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
MLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTIVKG
HCCCCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DRSRPFLIMIDEA
CCCCCEEEEEECC
>Mature Secondary Structure
MLWNVFVLDYGRSFKRTCLILGGSYIKFDMKNPVSINPFSEVPEDDSAKSIEARSDFLSN
CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
FPSILATMAAPQYGTSDLQQPMLQRALISVWQKNGAKAEITDIADWLSNREESYAKELGN
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHH
MLFPFTKDGQHGRFFSGKAQLSLNSDIVVIETDHLRSVPELLAVIVQIMIVHINQTIVKG
HCCCCCCCCCCCCEECCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DRSRPFLIMIDEA
CCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]