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The map label for this gene is xerD [C]

Identifier: 189184115

GI number: 189184115

Start: 1238585

End: 1238908

Strand: Direct

Name: xerD [C]

Synonym: OTT_1208

Alternate gene names: 189184115

Gene position: 1238585-1238908 (Clockwise)

Preceding gene: 189184114

Following gene: 189184116

Centisome position: 61.65

GC content: 32.72

Gene sequence:

>324_bases
ATGGTATTGCCAAGCCCAATAGATAATAGCAAACACTGGTTAAATGAGACAATACAATGTGCATGGGATAAAATTCGCAA
AAAAGCTAGAATACCGAATGTAACAATACATGATCTTAGAAGAACGTTTGCAACTTGGTCGATAAATAATGGAGAAGAAC
TACGGACAATAGCTGAAATGTTAGGGCATAGTCGTATTTCAACAACAGCTGAAATTTATACTAAAATTAGTGTAGAAAAG
GTAAAAGCAGCTACAAATAAAGTTGTAAACAATATATTAACAGGTGATAATGCTAATACTGATTATCTGAGAAATAAGGC
TTGA

Upstream 100 bases:

>100_bases
TACCAAAAACTAAGAGTAAAAGTGGAAAGACACTATATATAGGATTAGCTGATGCATTAATAACAATATTGAAATACCTA
AAGCAAGAAACAAATAGTGA

Downstream 100 bases:

>100_bases
TATATTAGATAGATTTTGTAAATTTTTGAAAATCACAGTAGTAGAATGAGAAATCTCATGCTACAATTGCGGCTGAAGGT
TATTATGCAAAATCAAAAAT

Product: putative integrase

Products: NA

Alternate protein names: Phage-Related Integrase

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEK
VKAATNKVVNNILTGDNANTDYLRNKA

Sequences:

>Translated_107_residues
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEK
VKAATNKVVNNILTGDNANTDYLRNKA
>Mature_107_residues
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEK
VKAATNKVVNNILTGDNANTDYLRNKA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12176; Mature: 12176

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LGHSRISTTAEIYTKISVEKVKAATNKVVNNILTGDNANTDYLRNKA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVLPSPIDNSKHWLNETIQCAWDKIRKKARIPNVTIHDLRRTFATWSINNGEELRTIAEM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LGHSRISTTAEIYTKISVEKVKAATNKVVNNILTGDNANTDYLRNKA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA