| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183904
Identifier: 189183904
GI number: 189183904
Start: 1043913
End: 1044983
Strand: Direct
Name: 189183904
Synonym: OTT_0997
Alternate gene names: NA
Gene position: 1043913-1044983 (Clockwise)
Preceding gene: 189183903
Following gene: 189183905
Centisome position: 51.96
GC content: 31.75
Gene sequence:
>1071_bases TTGAGCTTGCAGCAATCAGGCATTAAAGGTAATATCATTGCTAGTGCAGGAATTGCGAATTTGAGAAATTATTCACCATT TCCTGGTGAAAAAATCATCATTGCAGCAGATAATGATAGCAAAAATCCTATAACTAATAATACTGTAATTAAAGCTGCAA AAACGTTAGAAATGAAGGGAGCGATAACTTGTATAGTCAAACCACCAGAAAATGGTGATTTTAATAATCTGCTGCAAACT TGTGGAGACCAGTCAATTAGAGACATTATAGAACCTGAAATTACTAAACTGACTAAGGCAGTTGAAACAACCAAACTTAC TCAAACAGAAAATAATAGTATAGCAAAACAAAATGATATTACTAATGTTAAAGAATTGTATAATAAATCGTCATCTCTAT ACTACTTTAAACAAGAAGAGGAAGCTAAGGTGGAAACGATAGTAGTAAACAAATTTTTAGAAAACCATACAGGAATTTAT AGTGCAAAAATCTTTAACAATTCTAATTTAAGGGCAAATATGGTTTTTGATGAAGAGACTCAAAAATCCTGGCCTGCACT CACTATTTTTGTTAAAAATGAAGCAGGTGAAATTACTGGAGCTAAGATATTAACTCTGAATTCAAAAACATGTAATAAAG CTGATATTCCAGAAAAATCTGTTGGTACAATTAGTGGATCATTTGCTGAAATTGCTCAACAAAATCCAAAATACTCACCT GTAATAATCATTACAAAGGATATTGAAACAGCGTTAACCATTCAGCAAGCTAGAGTCGAAGGCAAAATCTTATGTGCAAT TGAAGCCGAAAATTTGCAAAACTATAATCCTGGCCCAAAAGAAAAGATCATTCTAGCAGTTAAAAATGACGTAAATACTG AAAAAGCTGAAAAAGTTCTAGAGGATAAGGAAGCAGTAGTCTGCACAGTCAAAAATGACTTCAATAATGTATTGAAAACT CAAGGATTATATGCTGTTAGAAATATTATCAGCCCTGAAATAAGAAAACTTAATGAAAAAATTGAATCAATACAAACTAA TATACAACCAGGATTATGTCCGAAACACTAG
Upstream 100 bases:
>100_bases TAAAACAATAGGTAAAATCAGCGAATCATTTATAATAATAGCAAAACGAAATGCAAATGACCCTAATATAACAGTTATAG CAGAAGGCGCCGAAACAGCA
Downstream 100 bases:
>100_bases GCAGAGTATGACACAGCATTTTTTATTAAAAAAACTATAGAGTGAAAAAATATGACAAAACAATTAAAGCATGATTCATT GGCAAAGACAATCATGAGTG
Product: putative conjugative transfer protein TraI
Products: NA
Alternate protein names: Conjugative Transfer Protein TraI; Conjugal Transfer Protein TraA; MobA/MobL Family Protein
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MSLQQSGIKGNIIASAGIANLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQT CGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIY SAKIFNNSNLRANMVFDEETQKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSP VIIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKT QGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
Sequences:
>Translated_356_residues MSLQQSGIKGNIIASAGIANLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQT CGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIY SAKIFNNSNLRANMVFDEETQKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSP VIIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKT QGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH >Mature_355_residues SLQQSGIKGNIIASAGIANLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQTC GDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDITNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYS AKIFNNSNLRANMVFDEETQKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPV IIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQ GLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39327; Mature: 39196
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLQQSGIKGNIIASAGIANLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKG CCCCCCCCCCEEEEECCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECC AITCIVKPPENGDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDI EEEEEEECCCCCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCCCCCCC TNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEET HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC QKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSP CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC VIIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVL EEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH EDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH CCCCEEEEEECCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SLQQSGIKGNIIASAGIANLRNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKG CCCCCCCCCEEEEECCHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECC AITCIVKPPENGDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDI EEEEEEECCCCCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCCCCCCC TNVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEET HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCC QKSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSP CCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC VIIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVL EEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH EDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH CCCCEEEEEECCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA