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The map label for this gene is intD [H]

Identifier: 189183847

GI number: 189183847

Start: 978862

End: 979908

Strand: Reverse

Name: intD [H]

Synonym: OTT_0940

Alternate gene names: 189183847

Gene position: 979908-978862 (Counterclockwise)

Preceding gene: 189183848

Following gene: 189183846

Centisome position: 48.78

GC content: 32.66

Gene sequence:

>1047_bases
ATGACGATAGGTGTATTTCCAGATTTATCTATTAAAGAAGCTAGAAAAATAGCAAGAGAATTAAAGAGATTAATGGCGAA
AGGAATAGATCCAAGAGAAGTAAAACGTCAACAACAGATGGAAGAAAATGAGAAATGTATAAAAGAAAGAGAAAGAAAAG
CTAACGATATTACATTCAAAGAGCTGTGTTATAAGTATATTGAAGAGTATGCCAAAATATATATTATACACTGGCAGAAA
GATGCTGCAAGAATATATAATTATGGGAAACAGTTATTTTTAAAAAAGATAAACGAGGTTAAAAGGAATGATATTCAACA
AATATTCAATGATATCAGCAAAAAGGGAAAATATGCCACAGCAAATCTAATACTACTAACCTTACGCACTATATTTAATA
AGGCAAAAAAATGGGGATTAATAGAAAACAATCCTACTCTAGGAATAGAGCAGCATAAACTGCAAGCAAGAGAGAGACGT
CTAAGTTACGATAAAATGGGTAGACTTTTACACGTATTATGTGGAGAAACAACTCCATTGATAAGAGATTTTGCATTACT
AGCGTTATATACTGGAGCTAGAAAAAGTAATGTATTAGAGATGGAATGGGACAATATAGATTTTGAAAGAAAAATATGGC
ATATACCAAAAACTAAGAACGGAAAGGCGCAAAATATACCATTAACAGATGAGGCAATGGAAATATTGCAAGCAAGGAAA
TTCACATCTGAAAGTAAATGGGTACTACCAAGTACTACTAGCGCAAGCGGACACTTAGAGCGGCCAAATAACTCATGGCA
TAGGGTTTGTAAAAAGGCTGGCATAAAAAATTTAAGGATACACGATCTAAGAAGGACGTTTGCAAGTTGTATGGGAGATG
TAGGTGCAAGTCAGAGGACAATTAGTATAGCATTGAATCATATTAGTCCAGAATCAACAATTAGTTATACTATACCTTGC
CTGAAGTTAGTACAAGAGTATATGTCTAAGGCTACACAAATAATTAATGGATGTGCTAGAAGTTATAATATTTATAATAT
TATCTGA

Upstream 100 bases:

>100_bases
ATCAAGGATAAAATTGAACCAGGACTTCAACTAAGAATATCACCGACAGGAAGAAAAACATGGTCTTTTGAAAAAAAAAT
TTAGAAAAGAAGGGATAAAA

Downstream 100 bases:

>100_bases
CTAATATAAAAGTTGTGGTAAGAATAGTGCAACTTCATGTCGCACATGCATGTATGTAAACTAATTATTGCAGGTAAAAT
CTGTGTTTGAAGATGTTTAG

Product: putative integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MTIGVFPDLSIKEARKIARELKRLMAKGIDPREVKRQQQMEENEKCIKERERKANDITFKELCYKYIEEYAKIYIIHWQK
DAARIYNYGKQLFLKKINEVKRNDIQQIFNDISKKGKYATANLILLTLRTIFNKAKKWGLIENNPTLGIEQHKLQARERR
LSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARK
FTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYTIPC
LKLVQEYMSKATQIINGCARSYNIYNII

Sequences:

>Translated_348_residues
MTIGVFPDLSIKEARKIARELKRLMAKGIDPREVKRQQQMEENEKCIKERERKANDITFKELCYKYIEEYAKIYIIHWQK
DAARIYNYGKQLFLKKINEVKRNDIQQIFNDISKKGKYATANLILLTLRTIFNKAKKWGLIENNPTLGIEQHKLQARERR
LSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARK
FTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYTIPC
LKLVQEYMSKATQIINGCARSYNIYNII
>Mature_347_residues
TIGVFPDLSIKEARKIARELKRLMAKGIDPREVKRQQQMEENEKCIKERERKANDITFKELCYKYIEEYAKIYIIHWQKD
AARIYNYGKQLFLKKINEVKRNDIQQIFNDISKKGKYATANLILLTLRTIFNKAKKWGLIENNPTLGIEQHKLQARERRL
SYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKF
TSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYTIPCL
KLVQEYMSKATQIINGCARSYNIYNII

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=283, Percent_Identity=26.8551236749117, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788974, Length=325, Percent_Identity=24, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40492; Mature: 40360

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGVFPDLSIKEARKIARELKRLMAKGIDPREVKRQQQMEENEKCIKERERKANDITFK
CEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ELCYKYIEEYAKIYIIHWQKDAARIYNYGKQLFLKKINEVKRNDIQQIFNDISKKGKYAT
HHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ANLILLTLRTIFNKAKKWGLIENNPTLGIEQHKLQARERRLSYDKMGRLLHVLCGETTPL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH
IRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARK
HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHH
FTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRT
CCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEE
ISIALNHISPESTISYTIPCLKLVQEYMSKATQIINGCARSYNIYNII
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure 
TIGVFPDLSIKEARKIARELKRLMAKGIDPREVKRQQQMEENEKCIKERERKANDITFK
EECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ELCYKYIEEYAKIYIIHWQKDAARIYNYGKQLFLKKINEVKRNDIQQIFNDISKKGKYAT
HHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ANLILLTLRTIFNKAKKWGLIENNPTLGIEQHKLQARERRLSYDKMGRLLHVLCGETTPL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH
IRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARK
HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHH
FTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRT
CCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEE
ISIALNHISPESTISYTIPCLKLVQEYMSKATQIINGCARSYNIYNII
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]