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The map label for this gene is atpD [H]

Identifier: 189183496

GI number: 189183496

Start: 600611

End: 602047

Strand: Reverse

Name: atpD [H]

Synonym: OTT_0589

Alternate gene names: 189183496

Gene position: 602047-600611 (Counterclockwise)

Preceding gene: 189183497

Following gene: 189183495

Centisome position: 29.97

GC content: 34.24

Gene sequence:

>1437_bases
ATGAAGTTAAAAGCCAAATATAAACAGCAATCCAAAGTTGGTAAGGTTGTACAAGTAGTTTCAGCTGTTGTTGATGTTAG
TTTTGCAGGTAAAGACTTACCGCATATTTTAAATGCTTTAGAGTGCACTATTAATAATGAAAAAATAGTTCTGGAAGTTG
TACAACACATAGGAGATGATATAGTACGATGTCTAGCTATGAACTCAACTGATGGATTATTTAGAGGAGCTGAAGTAATT
GATACTGGAGAACAAATTAAAGTACCAGTTGGTAAATCAATTTTAGGAAGGATATTGAATGTAGTTGGACAACCAATAGA
TGATTTAGGTCCAATTAAATGCGACAACTTCTCGCAAATTCATAAAGATGCTCCAAAGTTTATCAATCAATCTACTTCGA
GAAAAATACTAATTACTGGTATTAAAGTAATAGATTTACTTACTCCATACATCAGTGGAGGAAAAATTGGCCTTTTTGGT
GGTGCTGGAGTTGGTAAAACTGTATTAATAATGGAGATTATTAACAATGTAGCTAAGGCTTATAAAGGTTATACAGTTTT
TACTGGAGTTGGAGAGCGTACTAGAGAAGGTGGAGATTTATATAAAGAAATGGTTGGATCTAATATAATTGATCTTAATA
AGTTAGAAAATTCTAAAGTTACTTTGGTGTTTGGGCAAATGAATGAACCTCCTGGAGCAAGAGCTAGAGTGGCATTAACT
GGCTTAACAATAGCAGAGTCATTTCGCGATATGAACGAAGGTGAAGTTCTATTATTTATTGATAATATTTTCAGATTTAC
TCAGGCAGGAGCAGAAATATCCACATTATTAGGGCGTATTCCGTCTGCAGTTGGTTATCAGCCTACCCTAGCTACTGATA
TAGGAAGTTTACAGGAGCGGATTACATCGACAAAATTTGGAGCTATTACTTCAATACAAGCAATTTATGTGCCAGCTGAT
GATTTGACTGATCCAGCTCCAGTAGCTTGTTTTGCACATCTTGACGCTACTACAGTCCTTAGTCGTAAAATTGCTGAGCT
TGGTATTTATCCAGCTGTTGATCCGTTAAATAGTAGTTCACAAATTCTTGATGCTAATGTAATAGGACAAGAACACTATT
CAGTAGCTACTAAGGTACAAGAAATTTTGCAAACATACAAGTCGTTACAAGATGTAATAGCTATATTAGGTGTAGATGAA
TTGTCAGATGATGAGAAAAGAATTGTTTCGAGAGCTAGAAAAATACAGAGGTTTTTAACTCAGCCTTTTCATGTTGCAGA
AGTTTTTACAGGTAAACAAGGTAGATTTGTTAGTTTAGAAGATACAATTTATGGATTCAAAGGGTTGATTGAGGGAAAAT
ATGATGATTTGCCAGAAATGGCTTTTTACATGGTTGGTAGTATTGATGAAGCTATTGAAAAATCTAAAACATTATGA

Upstream 100 bases:

>100_bases
ATCTAATTTACAATTGTTTATATTTGTTATTTTTTCTATTGTAGCATAGTATAAAGCATATTATACTGAGCGTATACTTT
AAACGAATTTCGATTTACCA

Downstream 100 bases:

>100_bases
AACCTATAAATGGAACAACGCTTATAGTTAAAATTTTAGCTTTAGAAAAAATAATATACAATAATAATACTGTTGACATG
TTAGTGCTTCCAGGTTTGGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MKLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVVQHIGDDIVRCLAMNSTDGLFRGAEVI
DTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQIHKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFG
GAGVGKTVLIMEIINNVAKAYKGYTVFTGVGERTREGGDLYKEMVGSNIIDLNKLENSKVTLVFGQMNEPPGARARVALT
GLTIAESFRDMNEGEVLLFIDNIFRFTQAGAEISTLLGRIPSAVGYQPTLATDIGSLQERITSTKFGAITSIQAIYVPAD
DLTDPAPVACFAHLDATTVLSRKIAELGIYPAVDPLNSSSQILDANVIGQEHYSVATKVQEILQTYKSLQDVIAILGVDE
LSDDEKRIVSRARKIQRFLTQPFHVAEVFTGKQGRFVSLEDTIYGFKGLIEGKYDDLPEMAFYMVGSIDEAIEKSKTL

Sequences:

>Translated_478_residues
MKLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVVQHIGDDIVRCLAMNSTDGLFRGAEVI
DTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQIHKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFG
GAGVGKTVLIMEIINNVAKAYKGYTVFTGVGERTREGGDLYKEMVGSNIIDLNKLENSKVTLVFGQMNEPPGARARVALT
GLTIAESFRDMNEGEVLLFIDNIFRFTQAGAEISTLLGRIPSAVGYQPTLATDIGSLQERITSTKFGAITSIQAIYVPAD
DLTDPAPVACFAHLDATTVLSRKIAELGIYPAVDPLNSSSQILDANVIGQEHYSVATKVQEILQTYKSLQDVIAILGVDE
LSDDEKRIVSRARKIQRFLTQPFHVAEVFTGKQGRFVSLEDTIYGFKGLIEGKYDDLPEMAFYMVGSIDEAIEKSKTL
>Mature_478_residues
MKLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVVQHIGDDIVRCLAMNSTDGLFRGAEVI
DTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQIHKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFG
GAGVGKTVLIMEIINNVAKAYKGYTVFTGVGERTREGGDLYKEMVGSNIIDLNKLENSKVTLVFGQMNEPPGARARVALT
GLTIAESFRDMNEGEVLLFIDNIFRFTQAGAEISTLLGRIPSAVGYQPTLATDIGSLQERITSTKFGAITSIQAIYVPAD
DLTDPAPVACFAHLDATTVLSRKIAELGIYPAVDPLNSSSQILDANVIGQEHYSVATKVQEILQTYKSLQDVIAILGVDE
LSDDEKRIVSRARKIQRFLTQPFHVAEVFTGKQGRFVSLEDTIYGFKGLIEGKYDDLPEMAFYMVGSIDEAIEKSKTL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=67.3036093418259, Blast_Score=657, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=301, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=4e-23,
Organism=Homo sapiens, GI19913428, Length=384, Percent_Identity=23.9583333333333, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI19913426, Length=384, Percent_Identity=23.6979166666667, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI50345984, Length=392, Percent_Identity=24.4897959183673, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI4757810, Length=392, Percent_Identity=24.4897959183673, Blast_Score=83, Evalue=6e-16,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=63.7339055793991, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1788251, Length=333, Percent_Identity=29.7297297297297, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790172, Length=409, Percent_Identity=24.9388753056235, Blast_Score=95, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25144756, Length=477, Percent_Identity=67.2955974842767, Blast_Score=667, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=340, Percent_Identity=28.2352941176471, Blast_Score=111, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17510931, Length=372, Percent_Identity=23.9247311827957, Blast_Score=98, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17570191, Length=373, Percent_Identity=23.8605898123324, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988080, Length=390, Percent_Identity=23.3333333333333, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71988063, Length=390, Percent_Identity=23.3333333333333, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71988074, Length=336, Percent_Identity=22.9166666666667, Blast_Score=68, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6322581, Length=459, Percent_Identity=68.6274509803922, Blast_Score=648, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=375, Percent_Identity=23.4666666666667, Blast_Score=94, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6319370, Length=368, Percent_Identity=25, Blast_Score=89, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6320016, Length=238, Percent_Identity=27.3109243697479, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=68.3870967741936, Blast_Score=656, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=476, Percent_Identity=64.4957983193277, Blast_Score=630, Evalue=0.0,
Organism=Drosophila melanogaster, GI24583988, Length=360, Percent_Identity=26.3888888888889, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583986, Length=360, Percent_Identity=26.3888888888889, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583984, Length=360, Percent_Identity=26.3888888888889, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24583992, Length=307, Percent_Identity=27.3615635179153, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI20129479, Length=309, Percent_Identity=25.5663430420712, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=53.8461538461538, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI281361666, Length=359, Percent_Identity=24.2339832869081, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24646341, Length=359, Percent_Identity=24.2339832869081, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17136796, Length=359, Percent_Identity=24.2339832869081, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24658560, Length=297, Percent_Identity=23.5690235690236, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 52000; Mature: 52000

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVVQHIGDD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRCLAMNSTDGLFRGAEVIDTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQI
HHHHHHCCCCCCHHCCCHHCCCCCEEECCCCHHHHHHHHHHHCCCCHHCCCCCCCCHHHH
HKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFGGAGVGKTVLIMEIINNVAKA
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
YKGYTVFTGVGERTREGGDLYKEMVGSNIIDLNKLENSKVTLVFGQMNEPPGARARVALT
HCCCEEEECCCCCCCCHHHHHHHHHCCCCEEHHCCCCCEEEEEEECCCCCCCCCEEEEEE
GLTIAESFRDMNEGEVLLFIDNIFRFTQAGAEISTLLGRIPSAVGYQPTLATDIGSLQER
HHHHHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHH
ITSTKFGAITSIQAIYVPADDLTDPAPVACFAHLDATTVLSRKIAELGIYPAVDPLNSSS
HHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCC
QILDANVIGQEHYSVATKVQEILQTYKSLQDVIAILGVDELSDDEKRIVSRARKIQRFLT
CEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
QPFHVAEVFTGKQGRFVSLEDTIYGFKGLIEGKYDDLPEMAFYMVGSIDEAIEKSKTL
CCHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVVQHIGDD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRCLAMNSTDGLFRGAEVIDTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQI
HHHHHHCCCCCCHHCCCHHCCCCCEEECCCCHHHHHHHHHHHCCCCHHCCCCCCCCHHHH
HKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFGGAGVGKTVLIMEIINNVAKA
HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
YKGYTVFTGVGERTREGGDLYKEMVGSNIIDLNKLENSKVTLVFGQMNEPPGARARVALT
HCCCEEEECCCCCCCCHHHHHHHHHCCCCEEHHCCCCCEEEEEEECCCCCCCCCEEEEEE
GLTIAESFRDMNEGEVLLFIDNIFRFTQAGAEISTLLGRIPSAVGYQPTLATDIGSLQER
HHHHHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHH
ITSTKFGAITSIQAIYVPADDLTDPAPVACFAHLDATTVLSRKIAELGIYPAVDPLNSSS
HHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCC
QILDANVIGQEHYSVATKVQEILQTYKSLQDVIAILGVDELSDDEKRIVSRARKIQRFLT
CEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
QPFHVAEVFTGKQGRFVSLEDTIYGFKGLIEGKYDDLPEMAFYMVGSIDEAIEKSKTL
CCHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA