| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183471
Identifier: 189183471
GI number: 189183471
Start: 577961
End: 579676
Strand: Reverse
Name: 189183471
Synonym: OTT_0564
Alternate gene names: NA
Gene position: 579676-577961 (Counterclockwise)
Preceding gene: 189183475
Following gene: 189183470
Centisome position: 28.85
GC content: 31.06
Gene sequence:
>1716_bases ATGGCGCAAAATTTGCGTAATTTTGCAAGCAATAATTGCAAAATTACTAATAATAACAGTAGCAATAATGCAACTGTCTT TTATCGTTTTATTGGAAATTTTGTTCCAGCAGAATGGAAAGATCTGATTGGAGATAATGCTAAAGCTTTAAGCAAGACAT CTAAACAGCTTTTATCATGGATAGTATATAAACTACAGATCTATTACAATAATGATATAGATGAATTACAAGACAGTTAT TACTCTTTTGAAAAGGAGTTGCAGGTTTGTCAACGCAGGGTTAGGCAATGCTTAGTTGAACTACAAAAAGCCGGTTTCAT TGAAGTTGAAAATAGGACAATAATAAAAAACAACTTTAAGCTGCGTAATGTTCCATGTATAAAACTTCTAAAAAATTTTC AGCGTTTCACTGAAAAAGAAACAAAAGGAGAAAAAATTATTGATCTAACCCAAAAAATTTTTCGCTCCAACCTGAAAGAA ATTTCAGGTGAACCTGAAAAAAGTTTCAGGTACATATATAGATATAATAATAATAAAAAAAATAATAATAGATCTAGATC TACTGAAGATAAGTTAGTAGAGAATGATCAAAATAAAAATGAAGATCAACAGCAAAATTTGAAGTTTAAATATACGGAAT ATGATGATTTTATAGAAATTGAGTTAGTAGAAAATGAAAAAGAAAATCAACAGCAACAACAGAATTTGAATTTCTATGAG CTTAGTGATGTTAGTAATGACAAGCCATCAAACAAGGATTATGAGCAAAATAGTGAGTTAGCAACTCCAGCTATTACTAA AGATTCAGAGGTTGAAAAGAATGAATGCTATCCCAAAAGAAAAAGACTAGCAGATTATTATCCACTAACACCAGAAGATG CAGTTATACTACAACGTATGTCTAGTAGAAGCTTCAACATATACTTCATAAATCAATTACTGTTGAAGTTATCAAATAAA TATCCAAACCGTCATTTTGCAAATAAGATAGCAGTGCTAAACTATATGGCAAAAGCCTTAGCAAATGAATTACTAACTAC TGATCAGGCTAATAGTGGAAATTTTAGATTTAATGATGTAGGAAGATTTAAAGAACAGTATCTAGCAAATATTGAATCTG GTACAGATCGTAGTATGAAGGCTCAGTTGAAGCGTAAAATAGCTGGAGTCTTTGAAGCAGATATGGCTTATCAAATTTTA ACATCTTGTGATTTTGGGGTAGCGGTTAAAAACAAATATTACATCAAGTTGCTTAAGAATATTACACTGTCAGATCATAT TAAATTCAAGATACTACAGGAGGTACGAGCTGTGTATGGCAACGATATTGAGCAGTTACAAGTTATACCATTTGACGAAT CAAAACAAGTTGCCAATAGCACAACTGAGTATCAAAAAACCACAGTTTTACAGCAACAAATAAGTGATGAAGATTACCTT TCAGAACTTAGTAAAGAGCTAGGCTCCAACTCGACTTGGTACAAAGTACGAGAATCTTTAGTCACATGTTACGGTCAAGC TATCGATAAATCATGGTTTAGCAAATTAGAAGTTATAAACGAAGATAGTGTTAACAAAAAAATATTCATCAAAGCAAAAA CAGAATTTGAAGATAGTTACATCAGAGAGAACTATCTGAAAGATCTTGAGCCCGCTTTTAAAGCTCAAGGATTTTCTTTC GAGCTAGTTAAGTTTAGTAATTTTAATAAAATTTAA
Upstream 100 bases:
>100_bases TAGCTACTAAATCGCTATATTTACGCGGTATAAAAACGTGGTTTTTGATAGAAAAATCGCCTGAACCACCTGCCATATCT GACATTTTTGGAGGTTAGAA
Downstream 100 bases:
>100_bases AGGGTGATATGGAAAAAGATCTTGCAAAGATTGCTCCAAATAATATTCAGGCAGAGCAAATGATACTTGGAGCAATTCTG ATTAACAATCGTGCGCTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 571; Mature: 570
Protein sequence:
>571_residues MAQNLRNFASNNCKITNNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSWIVYKLQIYYNNDIDELQDSY YSFEKELQVCQRRVRQCLVELQKAGFIEVENRTIIKNNFKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKE ISGEPEKSFRYIYRYNNNKKNNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNK YPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDVGRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQIL TSCDFGVAVKNKYYIKLLKNITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSYIRENYLKDLEPAFKAQGFSF ELVKFSNFNKI
Sequences:
>Translated_571_residues MAQNLRNFASNNCKITNNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSWIVYKLQIYYNNDIDELQDSY YSFEKELQVCQRRVRQCLVELQKAGFIEVENRTIIKNNFKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKE ISGEPEKSFRYIYRYNNNKKNNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNK YPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDVGRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQIL TSCDFGVAVKNKYYIKLLKNITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSYIRENYLKDLEPAFKAQGFSF ELVKFSNFNKI >Mature_570_residues AQNLRNFASNNCKITNNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSWIVYKLQIYYNNDIDELQDSYY SFEKELQVCQRRVRQCLVELQKAGFIEVENRTIIKNNFKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEI SGEPEKSFRYIYRYNNNKKNNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYEL SDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNKY PNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDVGRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQILT SCDFGVAVKNKYYIKLLKNITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYLS ELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSYIRENYLKDLEPAFKAQGFSFE LVKFSNFNKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67029; Mature: 66898
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQNLRNFASNNCKITNNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSW CCCCHHHHHCCCCEEECCCCCCCCEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHH IVYKLQIYYNNDIDELQDSYYSFEKELQVCQRRVRQCLVELQKAGFIEVENRTIIKNNFK HHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCE LRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEISGEPEKSFRYIYRYNNNKK ECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCC NNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE CCCCCCCHHHHHHHCCCCCCCCHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHCCCEEE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRM ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCHHHHHHHH SSRSFNIYFINQLLLKLSNKYPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDV HCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHH GRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQILTSCDFGVAVKNKYYIKLLKN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHH ITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL CCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHCCHHHHHHHHHHHHHCCCHHHH SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSY HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH IRENYLKDLEPAFKAQGFSFELVKFSNFNKI HHHHHHHHCCHHHHCCCCEEEEEEECCCCCC >Mature Secondary Structure AQNLRNFASNNCKITNNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSW CCCHHHHHCCCCEEECCCCCCCCEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHH IVYKLQIYYNNDIDELQDSYYSFEKELQVCQRRVRQCLVELQKAGFIEVENRTIIKNNFK HHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCE LRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEISGEPEKSFRYIYRYNNNKK ECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCC NNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE CCCCCCCHHHHHHHCCCCCCCCHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHCCCEEE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRM ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCHHHHHHHH SSRSFNIYFINQLLLKLSNKYPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDV HCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHH GRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQILTSCDFGVAVKNKYYIKLLKN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHH ITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL CCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHCCHHHHHHHHHHHHHCCCHHHH SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSY HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHH IRENYLKDLEPAFKAQGFSFELVKFSNFNKI HHHHHHHHCCHHHHCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA