| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183456
Identifier: 189183456
GI number: 189183456
Start: 567376
End: 568158
Strand: Reverse
Name: 189183456
Synonym: OTT_0549
Alternate gene names: NA
Gene position: 568158-567376 (Counterclockwise)
Preceding gene: 189183457
Following gene: 189183455
Centisome position: 28.28
GC content: 32.82
Gene sequence:
>783_bases ATGACAAGGCATATAAAGAGCTTAAAGTTATATTGCAATAATGAAGCAACTAAAAGCATTAACAGCTTAATAAATCAGCT CAGCAGACCAAATGAGAAATCAGCTAGCATAACTCTGAAAACTGCTCATGATTTTGAGAAAGAACGGACAAAGCCAACTG TTTTTAGTACACTTGAAAACTGGTTTAAGTCTATAATCAATGATATCAATGATAGATCTCATGTGAATGAAGAATATTAT TACTTTACCGCTAAACCAGAGCAAGAAGCTAAAGTAGAAAAAGTCCAGCAAGAGAATAGCATAAAGCAATGCACCACCAA AGATATTTCTACTCCATTGTTTATGCAAATCAAAGAACAAAGACAATATGATTATGATGTAACCATTCTGTCAGCAGAAG GAAAAACGATATCAAGTTTTCAGGAAGCTGGCATTGATAGCAGAATGGTATATAGCTCAAATGTAAATAATTTAAAGTAT TATCAGCCATTTCAAGGAGAAAAGATTCTTATAGCTGCAAATAATGATAAACAAAATAAAGAATATGTAAGCACTATAAA CGAGGCTGTAAAAGTACTGACAAGCAAAGGAGCAATTACTAGCATCGTAATTCATTCAGAAGGTGAAGATTTTAACGAAA TGCTAAAAAATAAAGGAGCAACAGCTGTTAAGGAGCTTATGATACCTGAAATCATGAAGTTAATTAATACTCAGAACGTA AAAACAGAGTCTGAACAAGTCGTAAAAACTGACATAGCTCCAAAAATTGGACTTAGGAGATAG
Upstream 100 bases:
>100_bases TGGCTATGCAAGTACTGTTTATAAGGTCCAGGGAGCTTCTATAAAAGATGTATACGTTTTGCATAACGGAGTAAGTAATA TAAGCAGCTCATACGTAGCT
Downstream 100 bases:
>100_bases TTCTTACGATCGAAAATTGAATGTAAGCTATTCATTCACAGAGCGAATTACAAAATGAGCTATACATGATAGTTGAGATG GACTTTTGTAATTCGCATTA
Product: putative conjugative transfer protein TraA
Products: NA
Alternate protein names: MobA/MobL Family Protein; Conjugal Transfer Protein TraA; Conjugative Transfer Protein TraI; Conjugative Transfer Protein
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLENWFKSIINDINDRSHVNEEYY YFTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKY YQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNV KTESEQVVKTDIAPKIGLRR
Sequences:
>Translated_260_residues MTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLENWFKSIINDINDRSHVNEEYY YFTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKY YQPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNV KTESEQVVKTDIAPKIGLRR >Mature_259_residues TRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLENWFKSIINDINDRSHVNEEYYY FTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQRQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKYY QPFQGEKILIAANNDKQNKEYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNVK TESEQVVKTDIAPKIGLRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29746; Mature: 29615
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLEN CCCCCCHHEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCHHHHHHHH WFKSIINDINDRSHVNEEYYYFTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQ HHHHHHHHCCCHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH RQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNK CCCCCCEEEEECCCCCHHHHHHCCCCCEEEECCCCCCCEEECCCCCCEEEEEECCCCCHH EYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNV HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC KTESEQVVKTDIAPKIGLRR CCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure TRHIKSLKLYCNNEATKSINSLINQLSRPNEKSASITLKTAHDFEKERTKPTVFSTLEN CCCCCHHEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCHHHHHHHH WFKSIINDINDRSHVNEEYYYFTAKPEQEAKVEKVQQENSIKQCTTKDISTPLFMQIKEQ HHHHHHHHCCCHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH RQYDYDVTILSAEGKTISSFQEAGIDSRMVYSSNVNNLKYYQPFQGEKILIAANNDKQNK CCCCCCEEEEECCCCCHHHHHHCCCCCEEEECCCCCCCEEECCCCCCEEEEEECCCCCHH EYVSTINEAVKVLTSKGAITSIVIHSEGEDFNEMLKNKGATAVKELMIPEIMKLINTQNV HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC KTESEQVVKTDIAPKIGLRR CCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA