| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183244
Identifier: 189183244
GI number: 189183244
Start: 347930
End: 350077
Strand: Direct
Name: 189183244
Synonym: OTT_0337
Alternate gene names: NA
Gene position: 347930-350077 (Clockwise)
Preceding gene: 189183243
Following gene: 189183245
Centisome position: 17.32
GC content: 34.17
Gene sequence:
>2148_bases TTGAATAAAATAAGCTTTAAACATGGATATGCTACAACAGTTTGTAACCCACAAACAGCTGTCAAAAAAGATGTATATGT TCTTCATAATAATGGTGTAGGAATAGAAAGTTCTAACATAAGCATGATAGGGAATGCAGAGCAAGTACGGCTGTACTACA ATGTGCAAGCTACAAAAAATGTTGCTAACCTAATAGAGCAGCTTAGCACAGCTAAGACAGACTCTATCAATTCAAAAGAG GAGAATAATGATGTTCAAGCAAATGAAGTAAGGCAATATCAATCTGCTCAAAACTATAGAAAAAACGATTATTATTCAAA TAGCGAGGAAGACCTACAAAAATTGAGGGATGCAATAGCTTATAGAGCTGACACTATAGCTTGTGATCTTCTTGGAGATC CAAATAAGCGCCTATCTACATACGGAAAAATACGTTGGGGAGACACTGGCAAAATACAAGTAACCACCGAGGGCAAGTAC GCTGGAAAATGGTATGACTTTAGTACAGGACAAAAGGGTGATTTATTATCCCTGGTTCAAAGAGAAAGAGTATGCAGCTT TTTTGAGGCAAGGGAATATTTGAAAAGTATGGTTGGAATGTCTAATATTAGTCAACGGTATCAGAGACCGCCTAAGACTG ACGATTCTCAACAATACACTCAACAATCTGAAAGTGTTAAAATCGCAAAAGTTCAAAACTTGTATGAACGATCAAGCAGA ATACATGGTTATGAGATAGATACGAGCCCAAGCGCAGAAGTTGAAATAGTAAAAAAGTATCTTGAAAATCGTGGTATTAC TTTTGACAAAAGCACCGCAAGTTCAGACTTAAAAGCAAGTATACTGTTTGATACTCAAACTAGAGAAAATTATCCAGCAT TTACAGCATTTGCAAGAAATTCAAAAGGAGAAATTACCGGAGTACAGGCCGTATATCTAAATTCGGCAGGAGATAAGGCG AATATTTCAATTAACAGAAGATCTTTCGGTAAAATCAGAGGATCGTTCATAACAATCGCAAAGCGAAATGCGAATGACCC TAATATAACAATTATAGCAGAAGGCGCTGAAACAGCATTGAGCTTGCAGCAATCAGGCATTGAAGGTAATATCATTGCTA GTGCAGGAATTTCGAATTTGACAAATTATTCACCATTTCCTGGTGAAAAAATCATCATTGCAGCAGATAATGATAGCAAA AATCCTATAACTAATAATACTGTAATTAAAGCTGCAAAAACGTTAGAAATGAAGGGAGCGATAACTTGTATAGTCAAACC ACCAGAAAATGGTGATTTTAATAATCTGCTGCAAACTTGTGGAGACCAGTCAATTAGAGACATTATAGAACCTGAAATTA CTAAACTGACTAAGGCAGTTGAAACAACCAAACTTACTCAAACAGAAAATAATAGTATAGCAAAACAAAATGATATTACT AATGTTAAAGAATTGTATAATAAATCGTCATCTCTATACTACTTTAAACAAGAAGAGGAAGCTAAGGTGGAAACGATAGT AGTAAACAAATTTTTAGAAAACCATACAGGAATTTATAGTGCAAAAATCTTTAACAATTCTAATTTAAGGGCAAATATGG TTTTTGATGAAGAGACTCAAAAATCCTGGCCTGCACTCACTATTTTTGTTAAAAATGAAGCAGGTGAAATTACTGGAGCT AAGATATTAACTCTGAATTCAAAAACATGTAATAAAGCTGATATTCCAGAAAAATCTGTTGGTACAATTAGTGGATCATT TGCTGAAATTGCTCAACAAAATCCAAAATACTCACCTGTAATAATCATTACAAAGGATATTGAAACAGCGTTAACCATTC AGCAAGCTAGAGTCGAAGGCAAAATCTTATGTGCAATTGAAGCCGAAAATTTGCAAAACTATAATCCTGGCCCAAAAGAA AAGATCATTCTAGCAGTTAAAAATGACGTAAATACTGAAAAAGCTGAAAAAGTTCTAGAGGATAAGGAAGCAGTAGTCTG CACAGTCAAAAATGACTTCAATAATGTATTGAAAACTCAAGGATTATATGCTGTTAGAAATATTATCAGCCCTGAAATAA GAAAACTTAATGAAAAAATTGAATCAATACAAACTAATATACAACCAGGATTATGTCCGAAACACTAG
Upstream 100 bases:
>100_bases GACCAAATGAGAAATCAGCTAGCATCACTCTGAAAACTGCTAATGTGATGAAAATAAGTTTGTAGCTAAGACAGATACAG GAAACGAGGTAAGCTTTGAT
Downstream 100 bases:
>100_bases GCAGAGTATGACACAGCATTTTTTATTAAAAAAACTATAGAGTGAAAAAATATGACAAAACAATTAAAGCATGATTCATT GGCAAAGACAATCATGAGTG
Product: putative conjugative transfer protein TraI
Products: NA
Alternate protein names: Conjugative Transfer Protein TraA; Conjugal Transfer Protein TraA; MobA/MobL Family Protein; Conjugative Transfer Relaxase Protein TraI; Protein TraI; DNA Helicase
Number of amino acids: Translated: 715; Mature: 715
Protein sequence:
>715_residues MNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVRLYYNVQATKNVANLIEQLSTAKTDSINSKE ENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDLLGDPNKRLSTYGKIRWGDTGKIQVTTEGKY AGKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRPPKTDDSQQYTQQSESVKIAKVQNLYERSSR IHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNSKGEITGVQAVYLNSAGDKA NISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGNIIASAGISNLTNYSPFPGEKIIIAADNDSK NPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDIT NVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFVKNEAGEITGA KILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKE KIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
Sequences:
>Translated_715_residues MNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVRLYYNVQATKNVANLIEQLSTAKTDSINSKE ENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDLLGDPNKRLSTYGKIRWGDTGKIQVTTEGKY AGKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRPPKTDDSQQYTQQSESVKIAKVQNLYERSSR IHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNSKGEITGVQAVYLNSAGDKA NISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGNIIASAGISNLTNYSPFPGEKIIIAADNDSK NPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDIT NVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFVKNEAGEITGA KILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKE KIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH >Mature_715_residues MNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVRLYYNVQATKNVANLIEQLSTAKTDSINSKE ENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIAYRADTIACDLLGDPNKRLSTYGKIRWGDTGKIQVTTEGKY AGKWYDFSTGQKGDLLSLVQRERVCSFFEAREYLKSMVGMSNISQRYQRPPKTDDSQQYTQQSESVKIAKVQNLYERSSR IHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNSKGEITGVQAVYLNSAGDKA NISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETALSLQQSGIEGNIIASAGISNLTNYSPFPGEKIIIAADNDSK NPITNNTVIKAAKTLEMKGAITCIVKPPENGDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDIT NVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQKSWPALTIFVKNEAGEITGA KILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPVIIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKE KIILAVKNDVNTEKAEKVLEDKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79594; Mature: 79594
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVRLYYNVQATKN CCCCCCCCCCEEEECCCCHHHCCCEEEEECCCCCEECCCEEEECCCEEEEEEEEECHHHH VANLIEQLSTAKTDSINSKEENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIA HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH YRADTIACDLLGDPNKRLSTYGKIRWGDTGKIQVTTEGKYAGKWYDFSTGQKGDLLSLVQ HHHCEEEEEECCCCCHHHHCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCHHHHHHH RERVCSFFEAREYLKSMVGMSNISQRYQRPPKTDDSQQYTQQSESVKIAKVQNLYERSSR HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHCCEEHHHHHHHHHHHCC IHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARN CCCEECCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCEEEEECC SKGEITGVQAVYLNSAGDKANISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETAL CCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCCHHHH SLQQSGIEGNIIASAGISNLTNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGA HHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCE ITCIVKPPENGDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDIT EEEEEECCCCCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCCCCCCCH NVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQ HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC KSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPV CCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCE IIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLE EEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHC DKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH CCCEEEEEECCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MNKISFKHGYATTVCNPQTAVKKDVYVLHNNGVGIESSNISMIGNAEQVRLYYNVQATKN CCCCCCCCCCEEEECCCCHHHCCCEEEEECCCCCEECCCEEEECCCEEEEEEEEECHHHH VANLIEQLSTAKTDSINSKEENNDVQANEVRQYQSAQNYRKNDYYSNSEEDLQKLRDAIA HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH YRADTIACDLLGDPNKRLSTYGKIRWGDTGKIQVTTEGKYAGKWYDFSTGQKGDLLSLVQ HHHCEEEEEECCCCCHHHHCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCHHHHHHH RERVCSFFEAREYLKSMVGMSNISQRYQRPPKTDDSQQYTQQSESVKIAKVQNLYERSSR HHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHCCEEHHHHHHHHHHHCC IHGYEIDTSPSAEVEIVKKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARN CCCEECCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCEEEEECC SKGEITGVQAVYLNSAGDKANISINRRSFGKIRGSFITIAKRNANDPNITIIAEGAETAL CCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCCHHHH SLQQSGIEGNIIASAGISNLTNYSPFPGEKIIIAADNDSKNPITNNTVIKAAKTLEMKGA HHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCE ITCIVKPPENGDFNNLLQTCGDQSIRDIIEPEITKLTKAVETTKLTQTENNSIAKQNDIT EEEEEECCCCCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHEECCCCCCCCCCCCCH NVKELYNKSSSLYYFKQEEEAKVETIVVNKFLENHTGIYSAKIFNNSNLRANMVFDEETQ HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCC KSWPALTIFVKNEAGEITGAKILTLNSKTCNKADIPEKSVGTISGSFAEIAQQNPKYSPV CCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCE IIITKDIETALTIQQARVEGKILCAIEAENLQNYNPGPKEKIILAVKNDVNTEKAEKVLE EEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHC DKEAVVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLNEKIESIQTNIQPGLCPKH CCCEEEEEECCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA