| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183176
Identifier: 189183176
GI number: 189183176
Start: 267647
End: 269206
Strand: Direct
Name: 189183176
Synonym: OTT_0269
Alternate gene names: NA
Gene position: 267647-269206 (Clockwise)
Preceding gene: 189183174
Following gene: 189183177
Centisome position: 13.32
GC content: 30.32
Gene sequence:
>1560_bases ATGCGACCTGTAGTATTCGACTTTTTAACTAATAGTTGTAATATTATCAAAAAAAATAGTAACAATAATGACATAATATT TTATAACTTTATTGGAAATATCATTCCGCCAGAATGGAGAAAGCTAACTGGAGATAATGGAAAAGCATTAAGTAAAACAT CTAAACAGCTTTTATCATTCATAGTATTTAGACTACATATCTATTACAACAAAGATATAGATGAATTACAGGAAAGTTAT CAGCTTTATGAGGATAAGCTGAATGTTGCCCAAAGAAGAGTTAGGCAATGCTTAGTAGAATTAAGAGATGCAGGTTTTAT TGAAATTGAAAATAGGACAATAATTAAAGACAATGTTAAGTTAGGTAATGTCCCTTGCATAAAAATTCTGAAAAATTTTC AGCACTATAGTGAAAAAGGAAAAGAAGAAAATATAGCCTTACCAGAAAAAAATTTTCGTCCCAACCTGAAAGAAATTTCA GGTCAACCTGAAACTTTTTTCAGGGACATATATAGATATATAAAAAAATCTAAAAGATCTAGATCTACTGAAGGTGAGTT AGTAGAGAATAAAAAAAATGAAAATGAAGAACAAAATTTTCAAAATGTTGATGATTTTGAAAATGATATACAGACTTCAA CCAAAAATTGCAATCAAGACATTAAATCACTAATAACAAAGATTCTCAAGTCTTCGAATGGTAAAAAAGAATGGTTCAAA AGGTACAGGCTAGAAGACTTTTACCCACTAACACCAGAAGATGTAGTTACACTGCAACATAAGTCCGATAGAGGTTTTAA CATATACTTTATCAACAAATTGCTATTAAAGCTAGCAGGTCGATCTCCGGATTATCATTTTGGCTGTAAGGCATCAGTTC TAAACTATGTAGCACAAGCGTTAGCAAATGAATTACTAACTACTGATCAGGCAAATAGAGACAACTGTGGATTTGATAAC GAATTTAATAAGGAAAAATATCTTACTCAAATTGAAACAAGCGCAAATCTTAGTAAGGAAAGTCAGTTGAAGCATAAAAT TGCTGGTTCTTTTGAAGCAGCTATGGCTTATCAAATTTTGACTTCTTGTAGTTTTGGGCCAGCAGTTCGAACTAAGTTTT TTGTTAAGTTGCTTAAAAATATCACACTAACAGAATGTGATAGATCAAAGATATTACAAGCTGTACAAGATGTATATGGA TACGAAATTCAAGAATTACAAGTTACACCATTTGAGCAACCTACAACTGTTTCACAGAAACAAATCAATGAAGAAGAGTA TCTCTTGAATCTCAGTAAACAACTGGGCTCTAACTCGATTTGGTACAAAGTACGAGAATCTTTGATTAAAAGATATGGTC AAACTATTGATAAAAAATACTTTAGCGAATTGAACATTATAAATGAAGATAATGTTAACAAAAAAATATTCATCAAAGCA AAAACAGAATTTGAAGATAGTTACATCAGAGAGAACTATCTGAAAGATCTTGAGCCCGCTTTTAAAGCTCAAGGATTTTC TTTCGAGTTAGTTAAGTTTAGTAATTTTAATAAAATTTAA
Upstream 100 bases:
>100_bases TTCTACCTATTTTCTACCTTTTGCATAAAAATTTGACTGTAATTTGTAAAAAAAATATTTTCTAAAACACCTACTATAGC TGTATTTTTGGAGATGAAAA
Downstream 100 bases:
>100_bases AGGGTGATATGGAAAAAGATCTTGCAAAGATTGCTCCAAGTAATATTCAGGCAGAGCAAATGATACTTGGAGCAATTCTG ATTAACAATCGTGCGCTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MRPVVFDFLTNSCNIIKKNSNNNDIIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVAQRRVRQCLVELRDAGFIEIENRTIIKDNVKLGNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEIS GQPETFFRDIYRYIKKSKRSRSTEGELVENKKNENEEQNFQNVDDFENDIQTSTKNCNQDIKSLITKILKSSNGKKEWFK RYRLEDFYPLTPEDVVTLQHKSDRGFNIYFINKLLLKLAGRSPDYHFGCKASVLNYVAQALANELLTTDQANRDNCGFDN EFNKEKYLTQIETSANLSKESQLKHKIAGSFEAAMAYQILTSCSFGPAVRTKFFVKLLKNITLTECDRSKILQAVQDVYG YEIQELQVTPFEQPTTVSQKQINEEEYLLNLSKQLGSNSIWYKVRESLIKRYGQTIDKKYFSELNIINEDNVNKKIFIKA KTEFEDSYIRENYLKDLEPAFKAQGFSFELVKFSNFNKI
Sequences:
>Translated_519_residues MRPVVFDFLTNSCNIIKKNSNNNDIIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVAQRRVRQCLVELRDAGFIEIENRTIIKDNVKLGNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEIS GQPETFFRDIYRYIKKSKRSRSTEGELVENKKNENEEQNFQNVDDFENDIQTSTKNCNQDIKSLITKILKSSNGKKEWFK RYRLEDFYPLTPEDVVTLQHKSDRGFNIYFINKLLLKLAGRSPDYHFGCKASVLNYVAQALANELLTTDQANRDNCGFDN EFNKEKYLTQIETSANLSKESQLKHKIAGSFEAAMAYQILTSCSFGPAVRTKFFVKLLKNITLTECDRSKILQAVQDVYG YEIQELQVTPFEQPTTVSQKQINEEEYLLNLSKQLGSNSIWYKVRESLIKRYGQTIDKKYFSELNIINEDNVNKKIFIKA KTEFEDSYIRENYLKDLEPAFKAQGFSFELVKFSNFNKI >Mature_519_residues MRPVVFDFLTNSCNIIKKNSNNNDIIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSFIVFRLHIYYNKDIDELQESY QLYEDKLNVAQRRVRQCLVELRDAGFIEIENRTIIKDNVKLGNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEIS GQPETFFRDIYRYIKKSKRSRSTEGELVENKKNENEEQNFQNVDDFENDIQTSTKNCNQDIKSLITKILKSSNGKKEWFK RYRLEDFYPLTPEDVVTLQHKSDRGFNIYFINKLLLKLAGRSPDYHFGCKASVLNYVAQALANELLTTDQANRDNCGFDN EFNKEKYLTQIETSANLSKESQLKHKIAGSFEAAMAYQILTSCSFGPAVRTKFFVKLLKNITLTECDRSKILQAVQDVYG YEIQELQVTPFEQPTTVSQKQINEEEYLLNLSKQLGSNSIWYKVRESLIKRYGQTIDKKYFSELNIINEDNVNKKIFIKA KTEFEDSYIRENYLKDLEPAFKAQGFSFELVKFSNFNKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60702; Mature: 60702
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPVVFDFLTNSCNIIKKNSNNNDIIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSF CCCEEHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH IVFRLHIYYNKDIDELQESYQLYEDKLNVAQRRVRQCLVELRDAGFIEIENRTIIKDNVK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCC LGNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEISGQPETFFRDIYRYIKKSKRS CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHC RSTEGELVENKKNENEEQNFQNVDDFENDIQTSTKNCNQDIKSLITKILKSSNGKKEWFK CCCCCHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RYRLEDFYPLTPEDVVTLQHKSDRGFNIYFINKLLLKLAGRSPDYHFGCKASVLNYVAQA HHCCCCCCCCCHHHEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LANELLTTDQANRDNCGFDNEFNKEKYLTQIETSANLSKESQLKHKIAGSFEAAMAYQIL HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHH TSCSFGPAVRTKFFVKLLKNITLTECDRSKILQAVQDVYGYEIQELQVTPFEQPTTVSQK HHCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH QINEEEYLLNLSKQLGSNSIWYKVRESLIKRYGQTIDKKYFSELNIINEDNVNKKIFIKA HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE KTEFEDSYIRENYLKDLEPAFKAQGFSFELVKFSNFNKI ECCCCHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCCCC >Mature Secondary Structure MRPVVFDFLTNSCNIIKKNSNNNDIIFYNFIGNIIPPEWRKLTGDNGKALSKTSKQLLSF CCCEEHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHH IVFRLHIYYNKDIDELQESYQLYEDKLNVAQRRVRQCLVELRDAGFIEIENRTIIKDNVK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCC LGNVPCIKILKNFQHYSEKGKEENIALPEKNFRPNLKEISGQPETFFRDIYRYIKKSKRS CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHC RSTEGELVENKKNENEEQNFQNVDDFENDIQTSTKNCNQDIKSLITKILKSSNGKKEWFK CCCCCHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RYRLEDFYPLTPEDVVTLQHKSDRGFNIYFINKLLLKLAGRSPDYHFGCKASVLNYVAQA HHCCCCCCCCCHHHEEEEEECCCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LANELLTTDQANRDNCGFDNEFNKEKYLTQIETSANLSKESQLKHKIAGSFEAAMAYQIL HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHH TSCSFGPAVRTKFFVKLLKNITLTECDRSKILQAVQDVYGYEIQELQVTPFEQPTTVSQK HHCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH QINEEEYLLNLSKQLGSNSIWYKVRESLIKRYGQTIDKKYFSELNIINEDNVNKKIFIKA HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE KTEFEDSYIRENYLKDLEPAFKAQGFSFELVKFSNFNKI ECCCCHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA