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The map label for this gene is holA

Identifier: 189183151

GI number: 189183151

Start: 231377

End: 232396

Strand: Reverse

Name: holA

Synonym: OTT_0244

Alternate gene names: NA

Gene position: 232396-231377 (Counterclockwise)

Preceding gene: 189183152

Following gene: 189183150

Centisome position: 11.57

GC content: 27.84

Gene sequence:

>1020_bases
GTGAAGTTTACGTCTTATAATATTGCTGCATTATGGTCTTATATTAAAAAAGGTGATATTAGAGCAATAGCAGTTTATGG
TAATGATCATGGATTAATTGATTACCGGTGTCAGGAAATTATTAAGTTGTTCAATGCTAATCTTAGAATATACGATTATA
GAGAGCTTACTGAAGCTGATTTTATTTTTATATTAAACTCTAATAACTTATTTTCTCAACGTGAAATAGTAAAAATATAT
AATACTCCTGGCAATATTAATGCAGCATTAAAAAAAGCTTTAACTTTCAATAATAAGAATTTTTTAATAATGTTAGGCAG
TGAGTTCTCAGCTTCTTCTACCACTAGACAATGGTTTGAAACTCAAAAATATCTTGCAGCACTAGGATGTTATACAGAAA
GTAGCCAAGATATAAAGAAATTATTATCACAAATTGTAAATAAAGCAGGTAAAAATATTACTGCAGAAGCAGCAGTATAT
TTTTCTAATACTGCTTATGGAGATAAGTACTGTTATATTAATGAAATTAATAAGCTTATACTGTATTGTCATGATTGTGA
TACTATTAGTAAGCAGGAAGTAAATAAATGCATTAGCTCAGAAATACTTGGAACAGCTGATCTTATGTGCATATATTTCG
CCAAGGGACTAGCAATAAATTTTTTTAAAGAAGTAGAAAAGATAAGGAATAATAACATACCAGATGTTTGGATATTACGA
GCACTAATTAGATACTATATTAACCTGTATATTGTTTTAATGAAAAAAGAACATGGTGTTAGCATTGAACAAGCCATTAA
ATCCATTCAACCTCCTATATTTTTTAAATATGTTCAAGATTTTCAACTAATAGCACAAACTAAGACATTAAATAACGTAT
TGCATACATTGAATGAATTATATATGGCGGAATTATCAGTTAAGACAACACATCATTATATCAATAACATGATTGAAGTA
GTTTTTTTGAAAATAACCCATAAGTTGCGTTTGAGTTTTGAATTTACTGCATTAGTATAA

Upstream 100 bases:

>100_bases
CAGGTAAAAAAGCATATTGGCGATAAAGAAGTAAGAAAATGTATTTTTATTCCAAATAAATTAATTAATATAATTGTATG
ATAATACAGGATTATTACTA

Downstream 100 bases:

>100_bases
TTTGTTGAAAAAAAATATACATAATGGTTGATTATTAGTTAATAATTTGATATCTAATGATTCAGGCGGTTGTGGCGGAA
TCGGTAGACGCGCAGCATTG

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKFTSYNIAALWSYIKKGDIRAIAVYGNDHGLIDYRCQEIIKLFNANLRIYDYRELTEADFIFILNSNNLFSQREIVKIY
NTPGNINAALKKALTFNNKNFLIMLGSEFSASSTTRQWFETQKYLAALGCYTESSQDIKKLLSQIVNKAGKNITAEAAVY
FSNTAYGDKYCYINEINKLILYCHDCDTISKQEVNKCISSEILGTADLMCIYFAKGLAINFFKEVEKIRNNNIPDVWILR
ALIRYYINLYIVLMKKEHGVSIEQAIKSIQPPIFFKYVQDFQLIAQTKTLNNVLHTLNELYMAELSVKTTHHYINNMIEV
VFLKITHKLRLSFEFTALV

Sequences:

>Translated_339_residues
MKFTSYNIAALWSYIKKGDIRAIAVYGNDHGLIDYRCQEIIKLFNANLRIYDYRELTEADFIFILNSNNLFSQREIVKIY
NTPGNINAALKKALTFNNKNFLIMLGSEFSASSTTRQWFETQKYLAALGCYTESSQDIKKLLSQIVNKAGKNITAEAAVY
FSNTAYGDKYCYINEINKLILYCHDCDTISKQEVNKCISSEILGTADLMCIYFAKGLAINFFKEVEKIRNNNIPDVWILR
ALIRYYINLYIVLMKKEHGVSIEQAIKSIQPPIFFKYVQDFQLIAQTKTLNNVLHTLNELYMAELSVKTTHHYINNMIEV
VFLKITHKLRLSFEFTALV
>Mature_339_residues
MKFTSYNIAALWSYIKKGDIRAIAVYGNDHGLIDYRCQEIIKLFNANLRIYDYRELTEADFIFILNSNNLFSQREIVKIY
NTPGNINAALKKALTFNNKNFLIMLGSEFSASSTTRQWFETQKYLAALGCYTESSQDIKKLLSQIVNKAGKNITAEAAVY
FSNTAYGDKYCYINEINKLILYCHDCDTISKQEVNKCISSEILGTADLMCIYFAKGLAINFFKEVEKIRNNNIPDVWILR
ALIRYYINLYIVLMKKEHGVSIEQAIKSIQPPIFFKYVQDFQLIAQTKTLNNVLHTLNELYMAELSVKTTHHYINNMIEV
VFLKITHKLRLSFEFTALV

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921 [H]

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 39217; Mature: 39217

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTSYNIAALWSYIKKGDIRAIAVYGNDHGLIDYRCQEIIKLFNANLRIYDYRELTEAD
CCCCCCHHHHHHHHHHCCCEEEEEEEECCCCEEHHHHHHHHHHHCCCCEEEEHHHCCCCC
FIFILNSNNLFSQREIVKIYNTPGNINAALKKALTFNNKNFLIMLGSEFSASSTTRQWFE
EEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHEECCCEEEEEECCCCCCCHHHHHHHH
TQKYLAALGCYTESSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEHCCCCEEE
LYCHDCDTISKQEVNKCISSEILGTADLMCIYFAKGLAINFFKEVEKIRNNNIPDVWILR
EEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALIRYYINLYIVLMKKEHGVSIEQAIKSIQPPIFFKYVQDFQLIAQTKTLNNVLHTLNEL
HHHHHHHHEEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YMAELSVKTTHHYINNMIEVVFLKITHKLRLSFEFTALV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
>Mature Secondary Structure
MKFTSYNIAALWSYIKKGDIRAIAVYGNDHGLIDYRCQEIIKLFNANLRIYDYRELTEAD
CCCCCCHHHHHHHHHHCCCEEEEEEEECCCCEEHHHHHHHHHHHCCCCEEEEHHHCCCCC
FIFILNSNNLFSQREIVKIYNTPGNINAALKKALTFNNKNFLIMLGSEFSASSTTRQWFE
EEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHEECCCEEEEEECCCCCCCHHHHHHHH
TQKYLAALGCYTESSQDIKKLLSQIVNKAGKNITAEAAVYFSNTAYGDKYCYINEINKLI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEHCCCCEEE
LYCHDCDTISKQEVNKCISSEILGTADLMCIYFAKGLAINFFKEVEKIRNNNIPDVWILR
EEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALIRYYINLYIVLMKKEHGVSIEQAIKSIQPPIFFKYVQDFQLIAQTKTLNNVLHTLNEL
HHHHHHHHEEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YMAELSVKTTHHYINNMIEVVFLKITHKLRLSFEFTALV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]