BacMap

Definition	Orientia tsutsugamushi str. Ikeda, complete genome.
Accession	NC_010793
Length	2,008,987

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The map label for this gene is yahD [C]

Identifier: 189183060

GI number: 189183060

Start: 144257

End: 144901

Strand: Reverse

Name: yahD [C]

Synonym: OTT_0153

Alternate gene names: 189183060

Gene position: 144901-144257 (Counterclockwise)

Preceding gene: 189183061

Following gene: 189183059

Centisome position: 7.21

GC content: 30.85

Gene sequence:

>645_bases
ATGATATTAAAATCTAAGACTAAGTATACCTTACATAGCGCTATTCAAGATGGTGACATTAAAAAAGTGAAGCAGCTTAT
TAATAAGGATAGTACACTTGTCAATTCAAAATATAAAGACTGTACTACAGCTTTATATTTTGCTTTGAAATATAAGAATC
TACCTATTGCTGAGATTTTGCTGAACAATGGAGCTAACGTAAACGCACAAGATAATGATGGGCACACTGCTTTACATCTT
GTTGTTGACACAATTCAAGTATATTATGAATTTTTCGAAAAATATCCTGTCTATTGCAATGATCATATAGCATTACTCCT
AAAATATAATGCTGATGTAAATATCGAGAATAATCAAGGTAATACACCTTTATCTGATGCTGTTGAATGCAAATGTGTAG
AACCTTTAGCAATTATGCTAAAACATAATTCTACTGGTATTAATAAAAAATATGATGAAGGAGAAACACTACTACATATT
GCTATTCGTAATAAAATCATAGATATTATACAGCTTTTGATTGATTATGGAGCAGATATTGATGCAAAAGATGATAACGG
CATGACTACTATAGATTATGCTGCTAAAAGCGGTAATGCAGATATATTCAACTTTCTAACGGAACAATGGGTCCCATGGT
ATTAG

Upstream 100 bases:

>100_bases
TATCTTAAACTACCAGAGATCGGAGAACGCTTAAGCGAATATTGTAAACTTCATGCTAGTTAAAATGTAGTAAATAATTG
AGAATGAAAGGATTAAATAT

Downstream 100 bases:

>100_bases
GTTTTAACAGATAGCTAATATGTTAATGCTAATAAAGAGAAGTTAATATGAATGTTTTGAAATCACTTTTACAACCGTGT
TATGCTGTTGTAATGCTAAT

Product: ankyrin repeat-containing protein 03_01

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDCTTALYFALKYKNLPIAEILLNNGANVNAQDNDGHTALHL
VVDTIQVYYEFFEKYPVYCNDHIALLLKYNADVNIENNQGNTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHI
AIRNKIIDIIQLLIDYGADIDAKDDNGMTTIDYAAKSGNADIFNFLTEQWVPWY

Sequences:

>Translated_214_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDCTTALYFALKYKNLPIAEILLNNGANVNAQDNDGHTALHL
VVDTIQVYYEFFEKYPVYCNDHIALLLKYNADVNIENNQGNTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHI
AIRNKIIDIIQLLIDYGADIDAKDDNGMTTIDYAAKSGNADIFNFLTEQWVPWY
>Mature_214_residues
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDCTTALYFALKYKNLPIAEILLNNGANVNAQDNDGHTALHL
VVDTIQVYYEFFEKYPVYCNDHIALLLKYNADVNIENNQGNTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHI
AIRNKIIDIIQLLIDYGADIDAKDDNGMTTIDYAAKSGNADIFNFLTEQWVPWY

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI62988328, Length=186, Percent_Identity=31.1827956989247, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI268607595, Length=186, Percent_Identity=31.1827956989247, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI52426735, Length=208, Percent_Identity=29.3269230769231, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI52426737, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI188595682, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI62177127, Length=239, Percent_Identity=28.8702928870293, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI32967601, Length=208, Percent_Identity=27.4038461538462, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI224809478, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI70780359, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI70780357, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI70780355, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI70780353, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI215598574, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI224809474, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI224809476, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI224809472, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI224809470, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI224809468, Length=205, Percent_Identity=25.8536585365854, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI87239981, Length=254, Percent_Identity=25.5905511811024, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI30348954, Length=209, Percent_Identity=29.6650717703349, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI68131557, Length=210, Percent_Identity=30, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI89363047, Length=185, Percent_Identity=31.8918918918919, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI24233530, Length=223, Percent_Identity=28.6995515695067, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI157743284, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI116875852, Length=199, Percent_Identity=29.1457286432161, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI18252778, Length=199, Percent_Identity=25.6281407035176, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI41327754, Length=193, Percent_Identity=28.4974093264249, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI13376842, Length=150, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI34304381, Length=206, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI90186267, Length=190, Percent_Identity=27.8947368421053, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI224465233, Length=188, Percent_Identity=29.2553191489362, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI25145251, Length=207, Percent_Identity=27.0531400966184, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542700, Length=207, Percent_Identity=27.0531400966184, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71981389, Length=207, Percent_Identity=27.0531400966184, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71981411, Length=207, Percent_Identity=27.0531400966184, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71981414, Length=207, Percent_Identity=27.0531400966184, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71985677, Length=199, Percent_Identity=25.1256281407035, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555340, Length=200, Percent_Identity=28, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI161082089, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082085, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082110, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082081, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161082106, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI161082096, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI161082099, Length=198, Percent_Identity=28.2828282828283, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI161082092, Length=199, Percent_Identity=27.1356783919598, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281359521, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281359519, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28558752, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28558750, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28558756, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28558754, Length=198, Percent_Identity=29.2929292929293, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281364453, Length=171, Percent_Identity=30.4093567251462, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581842, Length=171, Percent_Identity=30.4093567251462, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571867, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571865, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24639454, Length=148, Percent_Identity=33.1081081081081, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550629, Length=200, Percent_Identity=27, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI281362676, Length=203, Percent_Identity=29.064039408867, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24650843, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356741, Length=224, Percent_Identity=25.4464285714286, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 24212; Mature: 24212

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDCTTALYFALKYKNLPIAEIL
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
LNNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPVYCNDHIALLLKYNADVNIENNQG
CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCEEEECCCC
NTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHIAIRNKIIDIIQLLIDYGADI
CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCC
DAKDDNGMTTIDYAAKSGNADIFNFLTEQWVPWY
CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MILKSKTKYTLHSAIQDGDIKKVKQLINKDSTLVNSKYKDCTTALYFALKYKNLPIAEIL
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
LNNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPVYCNDHIALLLKYNADVNIENNQG
CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCEEEECCCC
NTPLSDAVECKCVEPLAIMLKHNSTGINKKYDEGETLLHIAIRNKIIDIIQLLIDYGADI
CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCC
DAKDDNGMTTIDYAAKSGNADIFNFLTEQWVPWY
CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA