| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189026218
Identifier: 189026218
GI number: 189026218
Start: 1080946
End: 1082232
Strand: Direct
Name: 189026218
Synonym: TPASS_0995
Alternate gene names: NA
Gene position: 1080946-1082232 (Clockwise)
Preceding gene: 189026217
Following gene: 189026222
Centisome position: 94.87
GC content: 46.08
Gene sequence:
>1287_bases ATGAGTATGAGCAAAATACCTCTTATCAGTACGGTTACGTCTACCATATCTGCCATTAACGGTGCGTGTACTGGAGAACG CGTGGATATACACATTCAGACGCTCTCTCGTCTGAATGAGATAGCATCCGTTTTTCGCTTCGAGATGCCTGAGATTAAGA TTATTGATTTTGGTGACCCAAACGTCGACAGCGAAGCGTGTTTAAAAATTATAAAGGATGATCCTTGGCTTCTATTTGGT GGGGTGATTGCTATCACTAACTCGATGGAAGAAAAAATAAAAATCGTAAATCGCAAAGACCCGAATTTCCTTTCAGTTTC CACGCGGCAGGAATTTGAAGCGCATGCCTCCCAGGTTGTGCGAATCGTGGACAGAAACCGACACTTTCTTTCTAGTCGCA GCCTCGTGCACCAAGCACATGGACACGAGCAGGGAAATTTTATCTGCGACACCGATTCCTTTGAGATTACCTTTTACACC AGCTTGATTAGTTCGTACCTGTACAATACCAACCGTATCAATGAGCTTGAACGCACTTCGTTTGAAGGCGCAATGATGGA ACTGTTACTCAATGCACTGGAGCACGGAAACTGCGGCATTAGCTACGACGAAAAAACAGAGTGGCTCGAACAGCGCAAGG ATATCTTTGATTTGATTGCTCTGCGCAAGCAGGACCCGCGCATTAGCGCGAAAAAAATCTATATTTCCTATGACATTACA CTGCAGCGTACACGCATTACCATTCGTGACGAAGGCACAGGCTTTGATTGGAAAAGCCGCATGGCAAGCGCGTGCAAACC TGGTCTACACGGTATGGGCATAAAAATGACAGAAATTTTTGTCAAAAGGCTCAGCTATAACGACGTGGGCAACGAGGTGA CGTTTGAAATTGACAACCAGGAAAACGTCGCGAACCTTGTGCCTTCAATTTTGAAAAACCAACAGGTACTAACGTTCCGG GATGCCCAGGTGGTATGTTACCAGAACGAAGAATCCAGTTCCCTTTTCTACATTTCGTCGGGGAAATTCGCAGTGTACGT GGATAACAAGTTCATGTCCATGCTGACCCCATCAGACATATTCATCGGGGAAATGTCGTTCTTGCTCAACAACCGGCGCT CTGCAACGATTGTATCAGTAGGCGAAGGCACACTGGTAAAGATATCAAAGATGAAGTTCATCTCACTGATTGAGGATCAT CCTCACTATGGGATCTACCTCGCACGCCTGCTTGCAGGTAGACTTGCCCATCAATCGCGCGAGAGCGCAAGCTTAAAAAC ACCCTGA
Upstream 100 bases:
>100_bases GCATGCCCCCACACGATATACCTAATGCGTAGCCAGATCTCATTCTCGAATGATAAGTCAACCGATGATTACCGTGGCTC GATTTCTATAACAAAGGATT
Downstream 100 bases:
>100_bases CCCTTCTCGGTCAACGAACACCCGACACCGGCGCACAAGCTATCCCCTCATGACAGGACACCAACCGATTCAGGAGAAAC TATCAATAGCCGTCAGATAC
Product: cyclic nucleotide binding protein
Products: NA
Alternate protein names: Response Regulator With ATPase Domain; Response Regulator Receiver Protein
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MSMSKIPLISTVTSTISAINGACTGERVDIHIQTLSRLNEIASVFRFEMPEIKIIDFGDPNVDSEACLKIIKDDPWLLFG GVIAITNSMEEKIKIVNRKDPNFLSVSTRQEFEAHASQVVRIVDRNRHFLSSRSLVHQAHGHEQGNFICDTDSFEITFYT SLISSYLYNTNRINELERTSFEGAMMELLLNALEHGNCGISYDEKTEWLEQRKDIFDLIALRKQDPRISAKKIYISYDIT LQRTRITIRDEGTGFDWKSRMASACKPGLHGMGIKMTEIFVKRLSYNDVGNEVTFEIDNQENVANLVPSILKNQQVLTFR DAQVVCYQNEESSSLFYISSGKFAVYVDNKFMSMLTPSDIFIGEMSFLLNNRRSATIVSVGEGTLVKISKMKFISLIEDH PHYGIYLARLLAGRLAHQSRESASLKTP
Sequences:
>Translated_428_residues MSMSKIPLISTVTSTISAINGACTGERVDIHIQTLSRLNEIASVFRFEMPEIKIIDFGDPNVDSEACLKIIKDDPWLLFG GVIAITNSMEEKIKIVNRKDPNFLSVSTRQEFEAHASQVVRIVDRNRHFLSSRSLVHQAHGHEQGNFICDTDSFEITFYT SLISSYLYNTNRINELERTSFEGAMMELLLNALEHGNCGISYDEKTEWLEQRKDIFDLIALRKQDPRISAKKIYISYDIT LQRTRITIRDEGTGFDWKSRMASACKPGLHGMGIKMTEIFVKRLSYNDVGNEVTFEIDNQENVANLVPSILKNQQVLTFR DAQVVCYQNEESSSLFYISSGKFAVYVDNKFMSMLTPSDIFIGEMSFLLNNRRSATIVSVGEGTLVKISKMKFISLIEDH PHYGIYLARLLAGRLAHQSRESASLKTP >Mature_427_residues SMSKIPLISTVTSTISAINGACTGERVDIHIQTLSRLNEIASVFRFEMPEIKIIDFGDPNVDSEACLKIIKDDPWLLFGG VIAITNSMEEKIKIVNRKDPNFLSVSTRQEFEAHASQVVRIVDRNRHFLSSRSLVHQAHGHEQGNFICDTDSFEITFYTS LISSYLYNTNRINELERTSFEGAMMELLLNALEHGNCGISYDEKTEWLEQRKDIFDLIALRKQDPRISAKKIYISYDITL QRTRITIRDEGTGFDWKSRMASACKPGLHGMGIKMTEIFVKRLSYNDVGNEVTFEIDNQENVANLVPSILKNQQVLTFRD AQVVCYQNEESSSLFYISSGKFAVYVDNKFMSMLTPSDIFIGEMSFLLNNRRSATIVSVGEGTLVKISKMKFISLIEDHP HYGIYLARLLAGRLAHQSRESASLKTP
Specific function: Unknown
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48574; Mature: 48443
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMSKIPLISTVTSTISAINGACTGERVDIHIQTLSRLNEIASVFRFEMPEIKIIDFGDP CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCC NVDSEACLKIIKDDPWLLFGGVIAITNSMEEKIKIVNRKDPNFLSVSTRQEFEAHASQVV CCCHHHHHHHHCCCCEEEECCHHEECCCHHHHHEEECCCCCCEEEECHHHHHHHHHHHHH RIVDRNRHFLSSRSLVHQAHGHEQGNFICDTDSFEITFYTSLISSYLYNTNRINELERTS HHHHCCCHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEHHHHHHHHHCCCCCCCHHHHHH FEGAMMELLLNALEHGNCGISYDEKTEWLEQRKDIFDLIALRKQDPRISAKKIYISYDIT HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE LQRTRITIRDEGTGFDWKSRMASACKPGLHGMGIKMTEIFVKRLSYNDVGNEVTFEIDNQ EEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCC ENVANLVPSILKNQQVLTFRDAQVVCYQNEESSSLFYISSGKFAVYVDNKFMSMLTPSDI CCHHHHHHHHHCCCEEEEEECCEEEEEECCCCCEEEEEECCCEEEEECCCHHHHCCCCHH FIGEMSFLLNNRRSATIVSVGEGTLVKISKMKFISLIEDHPHYGIYLARLLAGRLAHQSR HHHHHHHHHCCCCCEEEEEECCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC ESASLKTP CCCCCCCC >Mature Secondary Structure SMSKIPLISTVTSTISAINGACTGERVDIHIQTLSRLNEIASVFRFEMPEIKIIDFGDP CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCC NVDSEACLKIIKDDPWLLFGGVIAITNSMEEKIKIVNRKDPNFLSVSTRQEFEAHASQVV CCCHHHHHHHHCCCCEEEECCHHEECCCHHHHHEEECCCCCCEEEECHHHHHHHHHHHHH RIVDRNRHFLSSRSLVHQAHGHEQGNFICDTDSFEITFYTSLISSYLYNTNRINELERTS HHHHCCCHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEHHHHHHHHHCCCCCCCHHHHHH FEGAMMELLLNALEHGNCGISYDEKTEWLEQRKDIFDLIALRKQDPRISAKKIYISYDIT HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEE LQRTRITIRDEGTGFDWKSRMASACKPGLHGMGIKMTEIFVKRLSYNDVGNEVTFEIDNQ EEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCC ENVANLVPSILKNQQVLTFRDAQVVCYQNEESSSLFYISSGKFAVYVDNKFMSMLTPSDI CCHHHHHHHHHCCCEEEEEECCEEEEEECCCCCEEEEEECCCEEEEECCCHHHHCCCCHH FIGEMSFLLNNRRSATIVSVGEGTLVKISKMKFISLIEDHPHYGIYLARLLAGRLAHQSR HHHHHHHHHCCCCCEEEEEECCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC ESASLKTP CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA