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The map label for this gene is ycfH [C]

Identifier: 189026217

GI number: 189026217

Start: 1080061

End: 1080870

Strand: Direct

Name: ycfH [C]

Synonym: TPASS_0994

Alternate gene names: 189026217

Gene position: 1080061-1080870 (Clockwise)

Preceding gene: 189026215

Following gene: 189026218

Centisome position: 94.79

GC content: 54.69

Gene sequence:

>810_bases
ATGGAGGTCGGTACGCGCGCAGGGGATTATCAGGAAAGAAAGGCTCTGCTCCTGCAGGCCTGCGCGGGGCGCTCGCTTCC
TTCTTGTCTGCACTTCTCTGTAGGGGTCCGGCCTGCGCCGGAGCCCATTGCGCATCCTGAGACAGCCCTTTCACTGCTTC
GGTCAGACGTGCGTGCCCTGTGCGCAGAACAGGCGCCCTACCGAGCCTTGGGTGAATGCGGTCTTGACCGACACTGGAAT
GGCCCTCAGGTAGCGTGCAAAGCACGGAAAGGATCTGGTGTGCGCGGTACACCAGATCTTGATGCAGAGGAGTATCTTTT
TAAGGCACAGCTCTCTATAGCGAAAGCTCAGAACCTGCCGCTCATCATTCATTCACGGGACGCTTTTGAACCGACACTCC
GTTGCCTGGACTCAGTGGGGTGGAGAAAGGGTGTGATGCATTGTTTCTCGTACGGAGTCGTTGAGGCACACGCTTTTTTA
GAACGTGGTTTGTACATCTCTTGTGCAGGCACACTTACGTACGCAAAGACGACATCCGAACTTCTCGCGCGCGATGCGCT
TATTCGGAGTATCCCTCTGGATCGTCTATTGTTAGAAACGGACACTCCCTACCTCGCTCCAGTACCGCATCGAGGAACAC
ACAACAGACCCGAGTATGTCCGACATACCTACGCGTTGGTAGCAAACATCCTTGGTATAAGTGAGAAGGCTTTAGCACAG
CACGTGTTTGCAAACTGCTGTGCCCTTTTTGAAGCGCAAGAACCGACAGAAGCATGTTCCCAAGCGCATGCCCCCACACG
ATATACCTAA

Upstream 100 bases:

>100_bases
ATACAGTGATTCGCACTGCCACCTTGCGCTGCTTGTAAAGCAAAGTGAGGATCCTCAATCCCTCTTCAGACAGCTGGACC
TTGCACGCTTCCCGTTTCTC

Downstream 100 bases:

>100_bases
TGCGTAGCCAGATCTCATTCTCGAATGATAAGTCAACCGATGATTACCGTGGCTCGATTTCTATAACAAAGGATTATGAG
TATGAGCAAAATACCTCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MEVGTRAGDYQERKALLLQACAGRSLPSCLHFSVGVRPAPEPIAHPETALSLLRSDVRALCAEQAPYRALGECGLDRHWN
GPQVACKARKGSGVRGTPDLDAEEYLFKAQLSIAKAQNLPLIIHSRDAFEPTLRCLDSVGWRKGVMHCFSYGVVEAHAFL
ERGLYISCAGTLTYAKTTSELLARDALIRSIPLDRLLLETDTPYLAPVPHRGTHNRPEYVRHTYALVANILGISEKALAQ
HVFANCCALFEAQEPTEACSQAHAPTRYT

Sequences:

>Translated_269_residues
MEVGTRAGDYQERKALLLQACAGRSLPSCLHFSVGVRPAPEPIAHPETALSLLRSDVRALCAEQAPYRALGECGLDRHWN
GPQVACKARKGSGVRGTPDLDAEEYLFKAQLSIAKAQNLPLIIHSRDAFEPTLRCLDSVGWRKGVMHCFSYGVVEAHAFL
ERGLYISCAGTLTYAKTTSELLARDALIRSIPLDRLLLETDTPYLAPVPHRGTHNRPEYVRHTYALVANILGISEKALAQ
HVFANCCALFEAQEPTEACSQAHAPTRYT
>Mature_269_residues
MEVGTRAGDYQERKALLLQACAGRSLPSCLHFSVGVRPAPEPIAHPETALSLLRSDVRALCAEQAPYRALGECGLDRHWN
GPQVACKARKGSGVRGTPDLDAEEYLFKAQLSIAKAQNLPLIIHSRDAFEPTLRCLDSVGWRKGVMHCFSYGVVEAHAFL
ERGLYISCAGTLTYAKTTSELLARDALIRSIPLDRLLLETDTPYLAPVPHRGTHNRPEYVRHTYALVANILGISEKALAQ
HVFANCCALFEAQEPTEACSQAHAPTRYT

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI226061853, Length=183, Percent_Identity=27.3224043715847, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787342, Length=198, Percent_Identity=37.8787878787879, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082439, Length=207, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994985, Length=197, Percent_Identity=32.48730964467, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559024, Length=186, Percent_Identity=32.258064516129, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29534; Mature: 29534

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVGTRAGDYQERKALLLQACAGRSLPSCLHFSVGVRPAPEPIAHPETALSLLRSDVRAL
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
CAEQAPYRALGECGLDRHWNGPQVACKARKGSGVRGTPDLDAEEYLFKAQLSIAKAQNLP
HHCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
LIIHSRDAFEPTLRCLDSVGWRKGVMHCFSYGVVEAHAFLERGLYISCAGTLTYAKTTSE
EEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
LLARDALIRSIPLDRLLLETDTPYLAPVPHRGTHNRPEYVRHTYALVANILGISEKALAQ
HHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
HVFANCCALFEAQEPTEACSQAHAPTRYT
HHHHHHHHHHCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEVGTRAGDYQERKALLLQACAGRSLPSCLHFSVGVRPAPEPIAHPETALSLLRSDVRAL
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
CAEQAPYRALGECGLDRHWNGPQVACKARKGSGVRGTPDLDAEEYLFKAQLSIAKAQNLP
HHCCCCHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
LIIHSRDAFEPTLRCLDSVGWRKGVMHCFSYGVVEAHAFLERGLYISCAGTLTYAKTTSE
EEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
LLARDALIRSIPLDRLLLETDTPYLAPVPHRGTHNRPEYVRHTYALVANILGISEKALAQ
HHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
HVFANCCALFEAQEPTEACSQAHAPTRYT
HHHHHHHHHHCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]