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The map label for this gene is 189026129

Identifier: 189026129

GI number: 189026129

Start: 988510

End: 988752

Strand: Direct

Name: 189026129

Synonym: TPASS_0906

Alternate gene names: NA

Gene position: 988510-988752 (Clockwise)

Preceding gene: 189026128

Following gene: 189026130

Centisome position: 86.75

GC content: 55.56

Gene sequence:

>243_bases
ATGGTCACGATGGAAGAAGAGCTAATCGCCTATATTGCGCGGGCGCTTGTGGATCGTCCTGGGGAGGTTACCGTCACCAA
GTCTCCAGGGGAGGGATTGGAGATCCTTCAGTTACGTGTTGCCTCTGAAGATGTAGGGAAGGTCATTGGCAAGCACGGCA
GAATTGCGCGCGCTCTGCGCACGCTCCTTTCTGCGTCTGCGCACGCTTCTCAGACGCGTTACGCTTTAGAGATCATCGAC
TAG

Upstream 100 bases:

>100_bases
CTTCTTCACAGCAGGCTGCCGATCTGGCGCACGTAGAGTCCGTTTCCTGCGCCGCTCCAATCCCTTCTTCCCCAGGGGGG
CAGGGCGTCTAGGCAAGGGG

Downstream 100 bases:

>100_bases
CGGCTCCTTTTCCGTCTTGCGGCCTTGTTGCAGGCGGTGTGTGGTGGGTTATGGATAGAATTGTGACTGCACGCATCGTG
AGCACCTTTGGGGTTGCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MVTMEEELIAYIARALVDRPGEVTVTKSPGEGLEILQLRVASEDVGKVIGKHGRIARALRTLLSASAHASQTRYALEIID

Sequences:

>Translated_80_residues
MVTMEEELIAYIARALVDRPGEVTVTKSPGEGLEILQLRVASEDVGKVIGKHGRIARALRTLLSASAHASQTRYALEIID
>Mature_80_residues
MVTMEEELIAYIARALVDRPGEVTVTKSPGEGLEILQLRVASEDVGKVIGKHGRIARALRTLLSASAHASQTRYALEIID

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y906_TREPA (O83876)

Other databases:

- EMBL:   AE000520
- PIR:   G71267
- RefSeq:   NP_219341.1
- ProteinModelPortal:   O83876
- IntAct:   O83876
- GeneID:   2611396
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0906
- NMPDR:   fig|243276.1.peg.900
- TIGR:   TP_0906
- HOGENOM:   HBG668070
- OMA:   QGRIARA
- ProtClustDB:   CLSK2300331
- BioCyc:   TPAL243276:TP_0906-MONOMER
- HAMAP:   MF_00088
- InterPro:   IPR009019
- InterPro:   IPR020627

Pfam domain/function: SSF54814 KH_prok

EC number: NA

Molecular weight: Translated: 8686; Mature: 8686

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTMEEELIAYIARALVDRPGEVTVTKSPGEGLEILQLRVASEDVGKVIGKHGRIARALR
CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TLLSASAHASQTRYALEIID
HHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MVTMEEELIAYIARALVDRPGEVTVTKSPGEGLEILQLRVASEDVGKVIGKHGRIARALR
CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TLLSASAHASQTRYALEIID
HHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876