Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 189026100

GI number: 189026100

Start: 955105

End: 956202

Strand: Direct

Name: rpfG [H]

Synonym: TPASS_0877

Alternate gene names: 189026100

Gene position: 955105-956202 (Clockwise)

Preceding gene: 189026099

Following gene: 189026126

Centisome position: 83.82

GC content: 43.35

Gene sequence:

>1098_bases
ATGGGCAATTCAGATATCTGTTCTGACATTAATGATATCGAAGAACTTCAATCTGAAGAAGGTGATGCACCTATACGAGA
AAATGCCAATCCAATCAGAGAGGATTACAATTTTATACGTGAACAAAACCCCATTCTCGGCTCAGGACTTGATCTTATCG
GAAGTGCAAAACTGCCCATGCTCTTTTTAGACAGCAATCTGCTGATTGAATATATCAGCGCCGAAGCGAATTCTCTTTTT
AGAGGTTATTACCATCTGGAGAGAAAGCCGTTCTTTAATGTGTTTGGGAATATCCTCAGCCGTAAGGAACTTGAAGACTT
TTTCTCTTGTGTCCGATCTCACTCTAAAGGATTTACCTGGAGAGGCACGATGGCCCATAAAATTCGTGCAAAAAGAGCGC
TATACACGCGCACAAGTTTTATCCCGCTTTCCATCAGCGACGCCCAACCTTCTGGATATATCGTTCTTTTCGAAGACATT
TCAGATATGTACTCGCAGCAGATCAGTAATATGCTGAGTAGTTTGCTACAAGCGTCAAAGCTTAAAGACAATGAAACAGG
GTTGCACTGCGAGCGCGTTAATCACTATTGCAGACTCATTGCAGAATACCTGTATGACATCAACTTATACCCCCAAGTCG
ATACGGACTTCGTAGAGAATATCGCCTTTCTTGCAGCTATGCACGACGTGGGGAAAATTGGTATTCCCGACTACGTTTTG
AAAAAACGTGGTGGATTAAACGAATTAGAGTGGGAGCTCATGAAGGAGCATACTATCAACGGTGCGCTCATTCTTTCTTC
TTACCCTGACCCTATGGCGAAGGAAATAGCGCTCAGTCATCACGAGCGCTGGGACGGCACAGGATACCCCTTCAAATTGG
AAGGAGAGATGATACCGCTTTCTGCACGTATTACGAGCATCGCCGATGTATATGATGCATTGCGTATGGAACGCTCTTAC
AAAAAGGGATTTTCTCATGAACAAACTACACACATGATTTTAGAACAGTCTGGAAAAAGCTTTGACCCCATTTTGGCACG
TGTATTTCAGAAAATACATACAAAGTTCAACGACGTGTGGGACACGCTACAGGACTGA

Upstream 100 bases:

>100_bases
CTTGCTTTGGTAAAAGTGCTCAATCACAGCGCCGCCACTCCGGGGGAGCGCGGAGCGCCGCAGTACACAACACGAACTTA
CGCAAAAGGAAGCTAATACT

Downstream 100 bases:

>100_bases
GCATCCTCAATCCTAGTCAGAGATAAGGTTTTCTTCGGTGTCAAATTGCTGCAAGGAGCTCATACCAGTTTCTGTCTGCA
TGCGGGAAATGAGAGCAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MGNSDICSDINDIEELQSEEGDAPIRENANPIREDYNFIREQNPILGSGLDLIGSAKLPMLFLDSNLLIEYISAEANSLF
RGYYHLERKPFFNVFGNILSRKELEDFFSCVRSHSKGFTWRGTMAHKIRAKRALYTRTSFIPLSISDAQPSGYIVLFEDI
SDMYSQQISNMLSSLLQASKLKDNETGLHCERVNHYCRLIAEYLYDINLYPQVDTDFVENIAFLAAMHDVGKIGIPDYVL
KKRGGLNELEWELMKEHTINGALILSSYPDPMAKEIALSHHERWDGTGYPFKLEGEMIPLSARITSIADVYDALRMERSY
KKGFSHEQTTHMILEQSGKSFDPILARVFQKIHTKFNDVWDTLQD

Sequences:

>Translated_365_residues
MGNSDICSDINDIEELQSEEGDAPIRENANPIREDYNFIREQNPILGSGLDLIGSAKLPMLFLDSNLLIEYISAEANSLF
RGYYHLERKPFFNVFGNILSRKELEDFFSCVRSHSKGFTWRGTMAHKIRAKRALYTRTSFIPLSISDAQPSGYIVLFEDI
SDMYSQQISNMLSSLLQASKLKDNETGLHCERVNHYCRLIAEYLYDINLYPQVDTDFVENIAFLAAMHDVGKIGIPDYVL
KKRGGLNELEWELMKEHTINGALILSSYPDPMAKEIALSHHERWDGTGYPFKLEGEMIPLSARITSIADVYDALRMERSY
KKGFSHEQTTHMILEQSGKSFDPILARVFQKIHTKFNDVWDTLQD
>Mature_364_residues
GNSDICSDINDIEELQSEEGDAPIRENANPIREDYNFIREQNPILGSGLDLIGSAKLPMLFLDSNLLIEYISAEANSLFR
GYYHLERKPFFNVFGNILSRKELEDFFSCVRSHSKGFTWRGTMAHKIRAKRALYTRTSFIPLSISDAQPSGYIVLFEDIS
DMYSQQISNMLSSLLQASKLKDNETGLHCERVNHYCRLIAEYLYDINLYPQVDTDFVENIAFLAAMHDVGKIGIPDYVLK
KRGGLNELEWELMKEHTINGALILSSYPDPMAKEIALSHHERWDGTGYPFKLEGEMIPLSARITSIADVYDALRMERSYK
KGFSHEQTTHMILEQSGKSFDPILARVFQKIHTKFNDVWDTLQD

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 41846; Mature: 41715

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSDICSDINDIEELQSEEGDAPIRENANPIREDYNFIREQNPILGSGLDLIGSAKLPM
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCE
LFLDSNLLIEYISAEANSLFRGYYHLERKPFFNVFGNILSRKELEDFFSCVRSHSKGFTW
EEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
RGTMAHKIRAKRALYTRTSFIPLSISDAQPSGYIVLFEDISDMYSQQISNMLSSLLQASK
CCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
LKDNETGLHCERVNHYCRLIAEYLYDINLYPQVDTDFVENIAFLAAMHDVGKIGIPDYVL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
KKRGGLNELEWELMKEHTINGALILSSYPDPMAKEIALSHHERWDGTGYPFKLEGEMIPL
HCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCEEEH
SARITSIADVYDALRMERSYKKGFSHEQTTHMILEQSGKSFDPILARVFQKIHTKFNDVW
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
DTLQD
HHHCC
>Mature Secondary Structure 
GNSDICSDINDIEELQSEEGDAPIRENANPIREDYNFIREQNPILGSGLDLIGSAKLPM
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCE
LFLDSNLLIEYISAEANSLFRGYYHLERKPFFNVFGNILSRKELEDFFSCVRSHSKGFTW
EEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
RGTMAHKIRAKRALYTRTSFIPLSISDAQPSGYIVLFEDISDMYSQQISNMLSSLLQASK
CCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
LKDNETGLHCERVNHYCRLIAEYLYDINLYPQVDTDFVENIAFLAAMHDVGKIGIPDYVL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH
KKRGGLNELEWELMKEHTINGALILSSYPDPMAKEIALSHHERWDGTGYPFKLEGEMIPL
HCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCEEEH
SARITSIADVYDALRMERSYKKGFSHEQTTHMILEQSGKSFDPILARVFQKIHTKFNDVW
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
DTLQD
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]